Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2904 ATGGGAACAAATTTCAGCATTCCCAAAACTGATAAGTTTTCTCAAGATGGTGAAAACGACCATCTTAGATATGGCTTATCATCTATGCAAGGCTGGCGTGTATCAATGGAAGATGCTCATGCTGCACATCTTGATCTGGATGCATCCACTTCGTTTTTTGGTGTTTATGATGGTCATGGAGGTAAAGTGGTTGCAAAGTTTTGTGCTAAGTATCTACACCAACAGGTGCTTACGAATGAAGCATACATAGCTGGAGATGTTGTAACCTCTCTTCAGAAAGCATTTTTTAGAATGGATGACATGATGCGTGGTCAAAGAGGATGGAGGGAATTAGCAGTCTTGGGTGACAAGTTAAACAAGTTTAGTGGGATGGTTGAAGGATTTATTTGGTCACCACGAAGAAATAATGGTAAGGACAAATGTGATGATGGTTGGACCTTTGAGGAGGGGCCTCATTCTGATTTCGCCGGACCAACTTCAGGAAGCACTGCATGTGTTGCAGTTATTAGAAACGACCAACTTTTTGTTGCAAATGCTGGTGATTCACGCTGTGTAATATCTAGGAACGGTGAGGCATATAATTTGTCTAGAGACCACAAACCTGATCTTGATATTGAAAAGGAAAGAATCTTGAAAGCTGGTGGTTTTATTCATGCAGGACGAGTTAATGGGAGTTTAAATCTTGCCAGAGCTATAGGTGACATGGAGTTTAAGCAGAATAAATTTCTTTCTGCTGAAAAACAAATTGTGACTGCCAATCCAGATATAAACATTGTTGACCGTCACGATGAAGATGAATTTTTAGTACTAGCTTGTGATGGTATATGGGATTGCCTTTCAAGCCAACAATTGGTAGATTTTGTACGTCAACAACTGGTCTTGGAAACAAAACTTTCTGTGATTTGTGAGAGAGTACTAGATCGGTGTTTGGCACCATCAATTGCTGTCGGTGTGGGATTTGATAACATGACCATGATCTTAGTGCAGTTCAAAAGACCATCGCAGTCCACTGCCCTGGCTCAAGAGCAATCCTCTTCAAATGAACAATATGCATGTGAAAGTTAG 1065 0.4056 MGTNFSIPKTDKFSQDGENDHLRYGLSSMQGWRVSMEDAHAAHLDLDASTSFFGVYDGHGGKVVAKFCAKYLHQQVLTNEAYIAGDVVTSLQKAFFRMDDMMRGQRGWRELAVLGDKLNKFSGMVEGFIWSPRRNNGKDKCDDGWTFEEGPHSDFAGPTSGSTACVAVIRNDQLFVANAGDSRCVISRNGEAYNLSRDHKPDLDIEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINIVDRHDEDEFLVLACDGIWDCLSSQQLVDFVRQQLVLETKLSVICERVLDRCLAPSIAVGVGFDNMTMILVQFKRPSQSTALAQEQSSSNEQYACES* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2904 354 PANTHER PROTEIN PHOSPHATASE 2C 1 340 IPR015655 GO:0004722|GO:0006470
Lja5g2904 354 CDD PP2Cc 23 330 IPR001932 -
Lja5g2904 354 Pfam Protein phosphatase 2C 158 312 IPR001932 -
Lja5g2904 354 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Lja5g2904 354 SUPERFAMILY PP2C-like 5 332 IPR036457 -
Lja5g2904 354 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Lja5g2904 354 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 340 - -
Lja5g2904 354 SMART PP2C_4 12 328 IPR001932 -
Lja5g2904 354 Gene3D - 1 331 IPR036457 -
Lja5g2904 354 ProSiteProfiles PPM-type phosphatase domain profile. 23 330 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2904 Lja-Chr5 56995044 57003490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2904 1 336 PP2C-type Phosphatase Gene Family AT2G25070 75.595 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2904 K17499 - gmx:100793667 568.155