Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2896 ATGTGGGTTGCTCCTCCACACTTCCTCCTCCTCCTCCTCCTCCTACTCACCACCACCACCACCTTCCCAACAACCCACTCACTCTCCTTCAACATCACCAACTTCGACGACGACACCACCGCCATCGCCTACGAAGGTGACGGAAAATCCACCAACGGCTCCATCGACCTCAACAAAGTCTCCTACTTCTTCCGCGTCGGAAGAGCCATCTCCGCCCAACCCCTCCACCTCTACGACCCAACAACCAAAACACTCACCGACTTCACCACCCGCTTCACCTTCACCATCTCCGCCATCAACAAAACCTCCTACGGCGATGGCTTCGCCTTCTACCTCGCCCCTCTCGGCTACCAAATCCCACCCAACTCCGCCGGCGGCACCTTCGGCCTCTTCAACGCCACCACCAACAACAACCTCCCTCAAAACCATGTCGTCGCCGTCGAGTTCGACACCTTCGTCGGCTCCACCGACCCCGCCGTCAAACACGTCGGCATCGACGATAACTCCCTCACCTCTGTCGCCTTCGCCGCCTTCGACATTGATAGAAACCTCGGGAAACCCTGTCACGTTCTCATCACCTACGATGCTTCCTCGAAGACCCTTTTCGTCGCTTGGTCGTTCAAGGGAAGAATCGAGAACAACAACAACGATTCGGGTTCTCCCAATTCGTCTCTTACATACAAAATTGACCTAATGCAGATTCTCCCTGAGTTGGTGAATGTAGGGTTTTCAGCTTCCACTGGGCTTTCCACTGAGCAGAATGTGATTCAAGCTTGGGAGTTCAGTTCAACTTTGAATTCCACGATTCTGGATGGAAGCAATGGGAAGAGCAAGAGCTCTCACTCTCGAATTGTTGTGGTTGTTGCGGCGGCGGTTGGTTCGATTTTTCTGGTGCTTTTGGGGGCTGTTGTTGGGTATTTGGTTGTGTGGAAGAAGAGAAGAGGGGAATTTGATGGTGAGGGTGATGAGGATGGAGGTTTGATTTCAGTGAAATTTGATTTGGATAAAGGGACTATACCAAGAAGATTTGATTATAAGGAGCTGGTTGAAGCTACTAATGGATTTGCAGATGATAGAATGCTTGGGAGAGGAGGGTATGGACAGGTTTACAAAGGGGTTTTGAGCTATTTAGGAAGGGTTGTTGCTGTCAAGAGGATCTTTGCTGATTTTGAAAATTCGGAGACCGTGTTCATTAATGAGGTTCGGATCATAAGCCGGTTGATACATCGGAACCTAGTTCAATTCATAGGGTGGTGTCATGAGGAAGGAGAGTTTTTGCTTGTTTTTGAGTACATGATGAATGGAAGCCTTGACACTCATTTGTTTGGGAACAAGAAGAATTTGCCCTGGGAAGTGAGGTATAAAGTGGCTCTAGGTGTGGCGCAAGCGCTTCGTTATCTTCATGAGGACGCGGAGCAGTGTGTTCTTCATAGGGATATTAAGTCGGCGAATGTGTTGTTGGACAATGATTTTAGCACTAAGCTTGGGGATTTTGGGATGGCGAAGTTGGTGGATCCGAGGTTGAGGACTCAGAGGACCGGTGTGGTTGGGACTTATGGGTATTTAGCGCCGGAATACATTAATGGAGGGAGGGCTAGTAAGGAATCTGATATGTACAGTTTTGGGATTGTGGCTATGGAGATTGCAAGTGGGAGGAGGATTTTTCAGGATGGGGACTTTCATGTGCCTCTGTTGAATTGGGTGTGGGGACTTTATGTGGAAGGGAATGTTTTGGATGCTGCTGATGGGAGATTGAACAAGGAGTTTGATGTGAATCAAATGACTAGCTTGCTCATTGTGGGGCTGTGGTGTACTCATCCAAATGACAAGGAAAGGCCAAAGGCTGCAGAAGTGATTAAGGTTCTTCAACTCGAAGCGCCGTTGCCGGAGATTCCGCTCGACATGCATGATCGTCTTCCTCATTCAGGGTTGCGGCAGGGGCCGCGGCAGCCACCACCGCCCCCGCCCAATTACTCTTCACAACCACCACCCATCACCCACAGCCTTGTTAGTGTTGGCACCAACAGCCTTGTTAGTGTTGGCCGTTAA 2049 0.5002 MWVAPPHFLLLLLLLLTTTTTFPTTHSLSFNITNFDDDTTAIAYEGDGKSTNGSIDLNKVSYFFRVGRAISAQPLHLYDPTTKTLTDFTTRFTFTISAINKTSYGDGFAFYLAPLGYQIPPNSAGGTFGLFNATTNNNLPQNHVVAVEFDTFVGSTDPAVKHVGIDDNSLTSVAFAAFDIDRNLGKPCHVLITYDASSKTLFVAWSFKGRIENNNNDSGSPNSSLTYKIDLMQILPELVNVGFSASTGLSTEQNVIQAWEFSSTLNSTILDGSNGKSKSSHSRIVVVVAAAVGSIFLVLLGAVVGYLVVWKKRRGEFDGEGDEDGGLISVKFDLDKGTIPRRFDYKELVEATNGFADDRMLGRGGYGQVYKGVLSYLGRVVAVKRIFADFENSETVFINEVRIISRLIHRNLVQFIGWCHEEGEFLLVFEYMMNGSLDTHLFGNKKNLPWEVRYKVALGVAQALRYLHEDAEQCVLHRDIKSANVLLDNDFSTKLGDFGMAKLVDPRLRTQRTGVVGTYGYLAPEYINGGRASKESDMYSFGIVAMEIASGRRIFQDGDFHVPLLNWVWGLYVEGNVLDAADGRLNKEFDVNQMTSLLIVGLWCTHPNDKERPKAAEVIKVLQLEAPLPEIPLDMHDRLPHSGLRQGPRQPPPPPPNYSSQPPPITHSLVSVGTNSLVSVGR* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2896 682 Gene3D Transferase(Phosphotransferase) domain 1 432 627 - -
Lja5g2896 682 SUPERFAMILY Protein kinase-like (PK-like) 339 634 IPR011009 -
Lja5g2896 682 SMART serkin_6 355 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2896 682 ProSitePatterns Legume lectins beta-chain signature. 145 151 IPR019825 -
Lja5g2896 682 ProSiteProfiles Protein kinase domain profile. 355 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2896 682 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
Lja5g2896 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Lja5g2896 682 Pfam Legume lectin domain 27 267 IPR001220 GO:0030246
Lja5g2896 682 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 265 IPR013320 -
Lja5g2896 682 CDD lectin_legume_LecRK_Arcelin_ConA 28 265 IPR001220 GO:0030246
Lja5g2896 682 CDD STKc_IRAK 361 623 - -
Lja5g2896 682 MobiDBLite consensus disorder prediction 663 682 - -
Lja5g2896 682 Gene3D Phosphorylase Kinase; domain 1 340 431 - -
Lja5g2896 682 Gene3D - 25 274 - -
Lja5g2896 682 Pfam Protein kinase domain 356 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2896 682 PANTHER PUTATIVE-RELATED 14 638 - -
Lja5g2896 682 PANTHER - 14 638 - -
Lja5g2896 682 MobiDBLite consensus disorder prediction 635 682 - -
Lja5g2896 682 MobiDBLite consensus disorder prediction 646 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2896 Lja-Chr5 56898565 56900951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2896 13 635 Receptor kinase-like Gene Family AT5G10530 45.197 1.16e-179 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lja5g2896 Pkinase 6.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2896 - - vun:114193012 908.286