Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2888 ATGGCAAACTGTCACCGTAACAACGTCGGAAACATCGTTCTCGGCCACCACCCAACCAAAACCACCACCACATTCTCCACCCACTTCCGCCTATGGAACTCCCTCTCCGCCGCCTCCTTCCGCCGCGTCGTCCTCGACGCCGTCAGCTGCGGCGCCAGCTCCCGCTACCACCACCGACACACCTTTGACCAAAACGACGATTCTCCCTCCGCCGCCTCGACCGCCAGATCAGACTCCTCCATCTCCGACGAGAAGCGGCGACACCAGGGCTCGAGGTCGGAGAAGCTCTCCGATCTGCTGAGCGTGGCGGAGTCGGAAGCGGAGGCTGAGACGAAGAAGAAGGAGGACGCGCTGGAGGAGATGAAGCGTCTTGTGGCGGAGCTGCATCAGGGTGATGATACGGTGAAGCGGCGAGAGGCTGCCGCCACCGTGAGGATGCTCGCGAAGGAGGACTCGCATGTCAGGGGAACGCTCGCAATGCTTGGTGCTATACCACCTCTGGTTGCAATGCTCGACTCCGAAGACCTCGATTCTCAGAAAGCTTCGCTGTATGCGTTGCTCAATCTGGGTATCGGAAACGACGCAAACAAAGCAGCAATTGTGAAAGTTGGCTCTGTTCACAAGATGCTCAAGCTCATTGAATCTCCAGAAGGTCTAGATTCAGGGGTGTCTGAAGCAATCGTTGCGAATTTCCTTGGATTGAGTGCTTTGGATTCGAACAAACCGATAATTGGGTCATCTGCTGCAGTACCATTTCTAGTTAGAACCCTTCAGAGTTCAGATGTTAAAACTAGCTCCCAGGCTAAGCAAGATGCTCTGCGAGCGCTGTACAATCTTTCAATCTTCCCGGGGAATATTTCATTCATTCTGGAAACCCATTTGGTCCCGTTTCTGATAAACTCAATAGGGGACATGGAAGTAACCGAAAGAAGCCTCTCAATCCTGAGCAATTTGGTATCGACCCGGGAGGGTAGAAAAGCTATCAGTGCTGTGCCGGATACCTTTCCCATCCTGGTGGATGTATTGAACTGGACCGACTCCCCTGAATGCCAGGAAAAGACTTCGTACGTTTTGATGGTGATGGCGCACAAATCCTTTGGTGACAGGCAGGGTATGATTGAGGCGGGGATTGTGTCGTCGTTGCTTGAGTTGTCGCTTCTCGGAACCACATTGGCTCAGAAAAGGGCCTCGAGGATGTTGGGAAGCTTGAGGGTGGACAAAGGGAAGTATGTCTCTGGGAGCTGTGGCGGAAATTTAGGCGCAACTGTCTCTGCCCCTATTTGCGGCTCTTCATCTTCTTGTGCAAAGCCAGATGGAGGAGGGAAAGAGGGATCTGAGGAGGATGAAGATATGATGATGAGTGACGAGAAGAAAGCGGTGAAGCAATTAGTCCAGCAGAGTTTGCAAAACAACATGAGGAAGATTGTGAAGAGGGCCAACTTGCCGCACGATATCGTTCCATCCGATCATTTTAGGTCTCTCACTTCGAGTTCGACTTCAAAGAGCCTACCATTCTGA 1518 0.5257 MANCHRNNVGNIVLGHHPTKTTTTFSTHFRLWNSLSAASFRRVVLDAVSCGASSRYHHRHTFDQNDDSPSAASTARSDSSISDEKRRHQGSRSEKLSDLLSVAESEAEAETKKKEDALEEMKRLVAELHQGDDTVKRREAAATVRMLAKEDSHVRGTLAMLGAIPPLVAMLDSEDLDSQKASLYALLNLGIGNDANKAAIVKVGSVHKMLKLIESPEGLDSGVSEAIVANFLGLSALDSNKPIIGSSAAVPFLVRTLQSSDVKTSSQAKQDALRALYNLSIFPGNISFILETHLVPFLINSIGDMEVTERSLSILSNLVSTREGRKAISAVPDTFPILVDVLNWTDSPECQEKTSYVLMVMAHKSFGDRQGMIEAGIVSSLLELSLLGTTLAQKRASRMLGSLRVDKGKYVSGSCGGNLGATVSAPICGSSSSCAKPDGGGKEGSEEDEDMMMSDEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFRSLTSSSTSKSLPF* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2888 505 Gene3D - 79 261 IPR011989 -
Lja5g2888 505 SMART arm_5 193 236 IPR000225 GO:0005515
Lja5g2888 505 SMART arm_5 151 191 IPR000225 GO:0005515
Lja5g2888 505 SMART arm_5 282 320 IPR000225 GO:0005515
Lja5g2888 505 SMART arm_5 237 281 IPR000225 GO:0005515
Lja5g2888 505 Pfam Armadillo/beta-catenin-like repeat 152 189 IPR000225 GO:0005515
Lja5g2888 505 MobiDBLite consensus disorder prediction 486 505 - -
Lja5g2888 505 SUPERFAMILY ARM repeat 120 403 IPR016024 -
Lja5g2888 505 Gene3D - 262 412 IPR011989 -
Lja5g2888 505 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 505 - -
Lja5g2888 505 MobiDBLite consensus disorder prediction 440 456 - -
Lja5g2888 505 MobiDBLite consensus disorder prediction 59 115 - -
Lja5g2888 505 MobiDBLite consensus disorder prediction 431 456 - -
Lja5g2888 505 MobiDBLite consensus disorder prediction 79 115 - -
Lja5g2888 505 MobiDBLite consensus disorder prediction 490 505 - -
Lja5g2888 505 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 162 204 IPR000225 GO:0005515
Lja5g2888 505 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 505 - -
Lja5g2888 505 Coils Coil 100 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2888 Lja-Chr5 56774456 56777516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2888 116 407 U-box Gene Family AT1G67530 30.435 1.29e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2888 - - mtr:MTR_1g014420 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2888 5 56774456 56777516 Lja1g3929 1 49833918 49836548 PCT