Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2885 ATGACCGAGGTGGAGAATCATAGCAAGATGGATGATCCCACTGACCAGTTTCCAGTAGGAATGCGTGTTCTTGCTGTTGATGATGATCCAATTTGCTTGAGGATTTTGGAGGCTCTGCTTCAGAAGTGCCAATACCATGTTACTGCGACTAAACACGCACCGACGGCGCTGCAGTTGTTGAGAGAAAACAAAGACAAGTTTGACCTGGTAATCAGTGATGTCCACATGCCAGACATGGATGGATTCAAGCTTCTTGAGCTTGTGGGGCTTGAGATGGACCTACCTGTCATAATGTTGTCTGTCAATGGCGACCCGAAGATGGTGTTGAAGGGAATTACTCATGGCGCTTGTGATTATCTGCTGAAACCTGTTAGAGTTGAGGAGCTACGGAACATTTGGCAGCATGTGGTCAGGAAGAAGAAGAAGACTGTCCCGAAGGAAGGGACCAAAACCGGCAACCAAGACACTCCTATTTCTCATAGTGACAACGGTCAAGGGTCGGCAGCGACAACAAATTCCGATCAAAATGGAAAATCATCCAAGAAAAGGAAGGACCTGGAGGAAGATGATGATAATGAGGTGCATGAGAATGGTGACGACAGTGATGACCCATCAGCTCAGAGGAAGCCTCGAGTTGTTTGGTCGGTTGACCTGCACCGCAAGTTTGTTGCTGCCGTCAATCAGTTAGGCCTGGATAAGGCTGTACCTAAAAGAATTCTTGAAATGATGAATGTTGATCAGCTTACAAGGGAGAATGTTGCCAGCCATCTTCAGAAATATAGACTTTATCTGAAGAGACTTAGCTGTGTGGAAAACCAACAAGCTAATATGGTGGCAGCCTTAGGCAGTGCAGATCTGTCCTACCAACAAGCTCATATGGTAGCAGCCTTAGGCAGTGCAGATCCATCCTATTTGAGAACGGGTTCTCTGAGTGCGCTCGGACATTTGCGGACATTGAACGCATCTCGACAGTTTCACAACAATGCTTTCAGATCCTTCACACATGATGGGATGGTTAGTAGAATGAACCCTCCTTCTAGTATGAATGTGCAAGGGTTGCCTTCTTCGGGAACTCTTCAGGTGATTCAGGCACAAAATTTAAACAATTCCATGAATGGCAGCCAACTTAAGTTCCATTCAGCTCTCATTGGTGGGAATCAGAATGATCAATTGCAACACAACAAGGGTGTTAGTCATATTCAAAACCTGAACACTAATTTTAATGCTAAACCCACTTTTCCCATCACCAATCAAAGACAAGGTGGGTTGAGTATCTCAAACAACGCCTTGATGTTAGAAATGAATCCTCAACACAAATTAATGGGAGGAGTTTCTACTTCATTAGCCCCACAACAACATTCACAATTCTCTCTCCCTTTGATGGATAATGGAAGGTTGAATGATGGTTGGCCCAGTGTTTTCCATTCATCTGGAAAAAATTCTTACACTCCAAGCGAACGTTTTGGACCGGCTTCTATGACTCCTACAAATAACATGAATCTGAGTGGTGCACCCTCCCCAAATTCATTGACAGATATGCACTCTAAAGGTGTCACTTTTACAAATACTCCTCCTGGGCAAATAAGCAATAGTGTTTCATTGCAAGGGTGGAATAATCATAATAATCTGAGTGGCGGTTACAATTCTCATGTTATTGGTAACTCAATAGGCTCTACGATTCCCCCGAATGGTGGTGTTCCAGACGGCAATGCTTCGATGAACTCAACCTTCAATTTTGGTGATCCCTTACAAATGAAGCATGATGGGATCATTGAATTACCTGGAGAGCCCTCATTGATACCACATCAGCAGGTACATGTAATGAACCAGCAGAAGCCTCGTCACAGCCGCTTCTCGAATAGTGTGGGTTCCCTGGAAGAATTGGCCAGTGCAATGATGATGAAACAGAATCACGACATGTATGGATTCCGCCGCGATAACAATCATTCTGGTGGTGGTGGTGGTGGTGGGGCACCTCTGTGA 1983 0.4483 MTEVENHSKMDDPTDQFPVGMRVLAVDDDPICLRILEALLQKCQYHVTATKHAPTALQLLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVNGDPKMVLKGITHGACDYLLKPVRVEELRNIWQHVVRKKKKTVPKEGTKTGNQDTPISHSDNGQGSAATTNSDQNGKSSKKRKDLEEDDDNEVHENGDDSDDPSAQRKPRVVWSVDLHRKFVAAVNQLGLDKAVPKRILEMMNVDQLTRENVASHLQKYRLYLKRLSCVENQQANMVAALGSADLSYQQAHMVAALGSADPSYLRTGSLSALGHLRTLNASRQFHNNAFRSFTHDGMVSRMNPPSSMNVQGLPSSGTLQVIQAQNLNNSMNGSQLKFHSALIGGNQNDQLQHNKGVSHIQNLNTNFNAKPTFPITNQRQGGLSISNNALMLEMNPQHKLMGGVSTSLAPQQHSQFSLPLMDNGRLNDGWPSVFHSSGKNSYTPSERFGPASMTPTNNMNLSGAPSPNSLTDMHSKGVTFTNTPPGQISNSVSLQGWNNHNNLSGGYNSHVIGNSIGSTIPPNGGVPDGNASMNSTFNFGDPLQMKHDGIIELPGEPSLIPHQQVHVMNQQKPRHSRFSNSVGSLEELASAMMMKQNHDMYGFRRDNNHSGGGGGGGAPL* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2885 660 CDD REC_typeB_ARR-like 23 137 - -
Lja5g2885 660 SUPERFAMILY CheY-like 20 141 IPR011006 -
Lja5g2885 660 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 265 IPR017930 -
Lja5g2885 660 SMART REC_2 21 133 IPR001789 GO:0000160
Lja5g2885 660 MobiDBLite consensus disorder prediction 149 176 - -
Lja5g2885 660 SUPERFAMILY Homeodomain-like 207 266 IPR009057 -
Lja5g2885 660 Gene3D - 20 155 - -
Lja5g2885 660 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 8 633 - -
Lja5g2885 660 MobiDBLite consensus disorder prediction 138 208 - -
Lja5g2885 660 Pfam Myb-like DNA-binding domain 211 261 IPR001005 -
Lja5g2885 660 Pfam Response regulator receiver domain 23 132 IPR001789 GO:0000160
Lja5g2885 660 MobiDBLite consensus disorder prediction 491 534 - -
Lja5g2885 660 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
Lja5g2885 660 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 633 IPR045279 GO:0009736
Lja5g2885 660 Gene3D - 205 268 - -
Lja5g2885 660 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2885 Lja-Chr5 56755196 56760073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2885 15 437 Response Regulator Gene Family AT2G25180 50.113 1.32e-116 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja5g2885 Response_reg 5.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2885 - K14491 lja:Lj5g3v0523200.1 1308.12