Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2883 ATGGAAGGACTGAGCAAAATCTTCTCTCTTCCAGAGGCTCCTCCAAGTCCAAGTACCCCATTGCAGAATCCACAGGAGAAGAAGAAGAAGAAAAATATAGAGCAATCTGTGGAGGAAGAAGAAGAAGAAGAGAAGGACACAAAGGTGGAAAGTTTATTGGATCTGAATGTTTGTAGCACTGATGACTCTGCTCTTGATTGCAGTACAGAAGGACCAGAACTCAATCTCATAACCTGTTTGGATGTGGGTTCTTCACCTGATGCTAATTCATCAGAAACCAACCCTCTTGGTTGTTCTGAGGCAGAGCCAAGAGTGTTCTCTTGCAACTACTGCCATAGGAAATTCTACAGTTCACAAGCACTTGGGGGTCACCAAAATGCACACAAGAGGGAGAGGTCAATAGCAAAAAGAAGTCATCATCATCATCACAGGTTTGGAACACAAATATTGGCCTCAGCAGCAGCTTTTGGTTTTCCTTTTGGGCATAGCAACAAACCCTTTGCAAGCATGGCTTCTCTACCCCTCTATCATGGTCATATACCTCTTGCAATTCAAGCACATTCCATGATCCACAAGCCTTCTTCTCATGTTTCCTCAAATGGGTTTGGAAGCTCATGTGGATCACATCATAACCTTTGGTCAAAACCCCTTATAGATCAACAAGCAGGAAAAGCAAAGCTAGCTATGGCAGATTTTCACAGACCAACAACATCAGCATTATTATCATCATCAAGAGGAAGTGTTGGTAGGTTTGAAGTGGTAGATACTGTGATGAATTCTGCAGTCAATAAAGAATATTTGGTTACTGGTGGAACTCGTTTGAAGGCTAGTAGTAATCAAGAAGAAATCAAACACCTTGATTTATCCCTCAAGCTTGGTTAG 882 0.4206 MEGLSKIFSLPEAPPSPSTPLQNPQEKKKKKNIEQSVEEEEEEEKDTKVESLLDLNVCSTDDSALDCSTEGPELNLITCLDVGSSPDANSSETNPLGCSEAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRSHHHHHRFGTQILASAAAFGFPFGHSNKPFASMASLPLYHGHIPLAIQAHSMIHKPSSHVSSNGFGSSCGSHHNLWSKPLIDQQAGKAKLAMADFHRPTTSALLSSSRGSVGRFEVVDTVMNSAVNKEYLVTGGTRLKASSNQEEIKHLDLSLKLG* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2883 293 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 292 IPR044246 GO:0009788
Lja5g2883 293 SUPERFAMILY beta-beta-alpha zinc fingers 103 134 IPR036236 -
Lja5g2883 293 MobiDBLite consensus disorder prediction 121 141 - -
Lja5g2883 293 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 292 - -
Lja5g2883 293 Gene3D Classic Zinc Finger 91 154 - -
Lja5g2883 293 MobiDBLite consensus disorder prediction 1 48 - -
Lja5g2883 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Lja5g2883 293 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Lja5g2883 293 Coils Coil 23 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2883 Lja-Chr5 56691913 56693308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2883 16 292 C2H2 Transcription Factor Family AT5G10970 39.236 1.16e-41 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2883 - - lja:Lj5g3v0526470.1 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2883 5 56691913 56693308 Lja1g3921 1 49656845 49657666 PCT