Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2877 ATGAAGCTTTTTCATTTGCTTCTTCTCATGCTCCTCCTTATTCTTCACAAACCCATTTGGATTCTTGCCTCATCTAACATAGCTGCTTCTTCTCCAGGTGTTGCAGTGGAGGGTGAACAGCACCAAATGGATTCGCACATGAAAATGATAATTGCTCTAGCCATTGTCAGCACTTCACTTGGTGCAGTGCTTTTGTGTGTGTTATGCTTCTGGATTTATCACTCCAAGTTTCCTTCAAAACCCAGCAAGAAAAACATTCAAAGTTCAGATGCTGAGAAAGGGCTTTCTTTAGCTCCATTTTTGAGTAAATTCCGGTCTGTGAAAATGGTTGGGAAGAAAGGGTGTGTTCCAATAATTGATTATAAGCAAATTGAAAAGGCCACAGGAAATTTCAAGGAAAGTAACATCTTGGGTGAGGGTGGATTTGGATGTGTTTACAAGGCTAGTTTGGATGATAACTTGGATGTTGCAGTGAAAAAAATGCACTGTGAAAATCACTTTGCTGAGAGAGAATATGAGAATGAGGTCAATTTGTTGAGTAAAATTCAACATCCAAATGTAATTGCTCTGCTTGGGTGTAGCAGTAATGAAGATACAAGGTTTATTGTCTATGAGTTGATGCAAAATGGGTCATTGGAAACTCAATTACATGGACCTTCTCATGGCTCATCATTGACTTGGCATATGAGGATGAAGATTGCTCTTGACACATCAAGAGGATTAAAATATCTGCATGAACACTGTTACCCTCAAGTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTAGATGCAAACTTCAATGCAAAGCTTTCTGATTTTGGTCTTGCCATAACCGATGGGTCCCAAAATAAGAATAACATCAAGCTTTCAGGCACATTGGGCTACGTAGCACCAGAGTATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTGTATGCTTTTGGAGTTGTGCTTCTGGAGCTTCTATTAGGAAGGAAGCCTGTAGAAAAACTGGCACCAGCTCAATGCCAATCTATTGTCACATGGGCCATGCCACAACTCACTGACAGATCCAAGCTCCCAAACATTGTGGATCCTGTGATTAGGAATACTATGGATCCCAAGCACTTGTACCAGGTTGCTGCTGTGGCTGTGCTATGCGTGCAACCAGAGCCATGTTACCGCCCCTTGATTGCAGATGTTCTCCACTCCCTCATCCCTCTTGTACCCGTTGAGCTTGGAGGAACACTTAGAGTTTCGCAAGTAACACGACAAGTCTTACCAGCTGATCCACCTGAGAATTCTAGTCAATGA 1302 0.4124 MKLFHLLLLMLLLILHKPIWILASSNIAASSPGVAVEGEQHQMDSHMKMIIALAIVSTSLGAVLLCVLCFWIYHSKFPSKPSKKNIQSSDAEKGLSLAPFLSKFRSVKMVGKKGCVPIIDYKQIEKATGNFKESNILGEGGFGCVYKASLDDNLDVAVKKMHCENHFAEREYENEVNLLSKIQHPNVIALLGCSSNEDTRFIVYELMQNGSLETQLHGPSHGSSLTWHMRMKIALDTSRGLKYLHEHCYPQVIHRDLKSSNILLDANFNAKLSDFGLAITDGSQNKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPAQCQSIVTWAMPQLTDRSKLPNIVDPVIRNTMDPKHLYQVAAVAVLCVQPEPCYRPLIADVLHSLIPLVPVELGGTLRVSQVTRQVLPADPPENSSQ* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2877 433 Gene3D Transferase(Phosphotransferase) domain 1 207 406 - -
Lja5g2877 433 PANTHER OS01G0750732 PROTEIN 28 422 - -
Lja5g2877 433 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Lja5g2877 433 SUPERFAMILY Protein kinase-like (PK-like) 113 401 IPR011009 -
Lja5g2877 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Lja5g2877 433 Gene3D Phosphorylase Kinase; domain 1 99 206 - -
Lja5g2877 433 PANTHER BNAA04G14780D PROTEIN 28 422 - -
Lja5g2877 433 Pfam Protein kinase domain 132 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2877 433 SMART serkin_6 131 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2877 433 ProSiteProfiles Protein kinase domain profile. 131 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2877 Lja-Chr5 56592184 56596728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2877 37 405 Receptor kinase-like Gene Family AT3G58690 43.467 4.12e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Lja5g2877 Pkinase 7.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2877 - - gmx:100785380 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2877 5 56592184 56596728 Lja1g3915 1 49569188 49572406 PCT