Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2871 ATGGCGGATCAACCTTCTCCGGAAGCTCCGGTGGTGGAGAAGCCGGCCGAGCCCTTGTTGACTTGGCCTCTTAATCTCAAATCGGTAGTGAATCAAATGTCGTATTTTGGGTTCTCCGCTTCAACAGGTATTGCTGTTGAGCTGAACTGTGTCCTTAAATGGAACATATCCATTGAGGTTTTCCCCGACAAGACTAATATTTTGAAACATGGTGAAAATTCGAACTCACTGAGGATAGGTTTGGGTGTTGGGGTGCCTCTTGGGATTCTCGTTGTGGCGAGTGTTGGTGGATTTTTGGGCTACATTTTCTGGAACAAGAGGGAAAATGCCTCTGATCCTCTGCTTGTTGGGACCCTCAAGAACCTACCCGGAACCCCGAGAGAGTTTCGGTACAAGGATCTCAAGAAGGCAACCAATAACTTCGACGAGAAAAACAAGCTTGGGCAAGGAGGGTTTGGTGTTGTTTACAAGGGAACACTGCCGGATGAAGGGTTGGAAGTGGCGGTTAAGAAATTCTCCAGGGACAAGATGAAGAGCACGGATGATTTCTTGGCTGAACTCACCATTATCAATCGTCTTCGTCACAAGCATCTTGTCAGGTTACAAGGATGGGGCCACAAAAACGGCGTATTGCTCTTGGTGTACGATTACATGCCCAATGGCAGCTTAGACAACCACATTTTTTGTACGGAAGGGAGCAGCATTAGCCCCCTAAGTTGGCATCTTCGGTACAGGATCATATCAGGGGTGGCATCTGCACTGAATTACCTGCATAACGATTATGACCAAAAAGTGATTCACAGAGACCTTAAGGCAAGCAACATCATGCTGGACACTGACTTCAATGCTCGGTTAGGTGACTTTGGCTTGGCTCGCGCAATTGAAAATGAGAAAACATCATATGCAGATCAGATGGAAGGAGTTCAGGGCACTCTGGGATACATTGCACCTGAGTGTTTCCACACAGGCAAGGCCACTAGGGCATCAGATGTTTATGGGTTTGGAGCTGTGCTCCTTGAGGTGGTGTGTGGTCAGAGGCCATGGACAAAGATTGAGGGTTACCAGTTTTTGGTGGACTGGGTGTGGCACTTGCACCGCGAAGGAAGGATATTAGAAGCAGTGGATCATAGACTCGGGGATGAGTATGTGAGTGAAGAGGCAGAGAGGGTATTGAAATTAGGACTAGCATGCTCACACCCCATTGCCAATGAGAGACCTAAAATCCAGGCAATTGTTCAGATCATATCTGGCTCAATGCCTGTGCCTCATGTACCACCATTCAAGCCAGCTTTTGTGTGGCCAGGTTGGGATCTAGAGAGTCTTCCAGATATCCTTACAGAAACAATGAGTAGTACTGAATGA 1362 0.475 MADQPSPEAPVVEKPAEPLLTWPLNLKSVVNQMSYFGFSASTGIAVELNCVLKWNISIEVFPDKTNILKHGENSNSLRIGLGVGVPLGILVVASVGGFLGYIFWNKRENASDPLLVGTLKNLPGTPREFRYKDLKKATNNFDEKNKLGQGGFGVVYKGTLPDEGLEVAVKKFSRDKMKSTDDFLAELTIINRLRHKHLVRLQGWGHKNGVLLLVYDYMPNGSLDNHIFCTEGSSISPLSWHLRYRIISGVASALNYLHNDYDQKVIHRDLKASNIMLDTDFNARLGDFGLARAIENEKTSYADQMEGVQGTLGYIAPECFHTGKATRASDVYGFGAVLLEVVCGQRPWTKIEGYQFLVDWVWHLHREGRILEAVDHRLGDEYVSEEAERVLKLGLACSHPIANERPKIQAIVQIISGSMPVPHVPPFKPAFVWPGWDLESLPDILTETMSSTE* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2871 453 SUPERFAMILY Protein kinase-like (PK-like) 123 434 IPR011009 -
Lja5g2871 453 SMART serkin_6 141 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2871 453 Gene3D Transferase(Phosphotransferase) domain 1 218 420 - -
Lja5g2871 453 PANTHER - 3 452 - -
Lja5g2871 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Lja5g2871 453 ProSitePatterns Protein kinases ATP-binding region signature. 147 171 IPR017441 GO:0005524
Lja5g2871 453 SUPERFAMILY Concanavalin A-like lectins/glucanases 13 162 IPR013320 -
Lja5g2871 453 Gene3D - 6 79 - -
Lja5g2871 453 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 3 452 - -
Lja5g2871 453 Pfam Protein kinase domain 142 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2871 453 Gene3D Phosphorylase Kinase; domain 1 126 217 - -
Lja5g2871 453 ProSiteProfiles Protein kinase domain profile. 141 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2871 453 Pfam Legume lectin domain 13 64 IPR001220 GO:0030246
Lja5g2871 453 CDD STKc_IRAK 147 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2871 Lja-Chr5 56412013 56415492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2871 11 447 Receptor kinase-like Gene Family AT5G55830 39.913 1.66e-102 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lja5g2871 Pkinase 7.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2871 - - lja:Lj5g3v0528900.1 907.901