Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2870 ATGCTTGGTTATGGTGGTGGTGAGGATTGGGGCTTTGTTTTCTGGATTTTGATTTCCTTACTTGGAGCTGTGTTTGAGAATTTACTCTCTATGGTTCGAAATGAATTTGCAACCATTTCTGGAATCAAGGGTAAGGCTGAAAAGCTGTCACGCACTCTAGAACTGATCAAGGCTATTGTAGAAGATGCTGAGGAGAAACAAATAACTAACCGATCCATAAAGGTATGGCTGCAGCAACTCAAAGATGCTGTTTACATTCTAGATGATATCCTTGATGAATGTTCCATAGAATCCCTTCGACTTGGTGGATTCTCAATCATTCCCCAACCTCAAATATATGGACGACAAGATGATAAGGAGAAGATTGTGGAGTTCCTTCTCAGTCAAGAACGCGACTCTGACTTCCTTTCCGTCTATCCCATAGTTGGTTTAGGTGGAATGGGGAAAACAACACTTTCTCAGATGGTCTACAATGATAATAGGGTGAGTGACAATTTTAACCCAAAGACATGGATTTGCGTTTCTGAGAATTTCTCTGTCAAGAGAATTTGTTGTTCCATTGTAGAATCTGTCACAGGAGAAAAATATGATGCCTTGGGTTTGGATGTAATAGAAAGAAAAGTGCAAACACTGTTACAAAGTAAAAGATATTTGCTGGTTCTGGACGATGTGTGGAACAGAAATCAAGAAATGGAATTTGGATTAAGTCAAGAGAAATGGAACCAGTTGAAATCTGTTCTGTTGTGTGGATCCAAAGGTTCGTCTGTTTTAGTATCCACTCGTGATATGGATGTTGCAGCAATCATGGGAACATGCCAAGCTCACTGTTTGCGTGGTCTATCTGTGGATGATTGTTGGTTGTTGTTCAAGCAATATGCATTTGGAGCTAACAATGAGGAGCGTGTTGAGCTTGTAGCTATAGGCAAGGAGATCATAAAAAAGTGTGGGGGATCACCTCTTGCAGCACGAGCATTAGGAGGTCTCTTACACTCAAGGAATGAGGAAAAGGAATGGGTTGAAGTTAAAGAAAGTAGGCTTTGGAATTTACAAAATGAAAGATGTATTTTTCCTGCCTTGAGGTTGAGCTACTTTCACTTAACTCCAACTTTGAGGCAGTGTTTTGCATTCTGTGCCATATTTCCCAAATATACATTCATCGACAAGGAAGATCTGATCTTTCTTTGGATGGCCAATGGGTTTATCTCATCTAGGGAAAACATGGAGGCAGAACATGTTGGTAATATGATTTGGAATGAATTGTATCAAAAATCATTCTTCCATATTATCCATATAAGTGATGAAGGAGATACTACTTTCATAATGCATGACCTTGTCCATGATCTTGCTCAATCTATCATGGGGAATGAATGTGTGATTTTGAAGAATGCAAACATGACAGATTTGTCTTCAAGCACACACCATGTTGTTTTAGATCCTAGTTCAGAAAAGTTATCATTCAATAAAGGAACTTTCGAGAAAGTTGAATCTTTACGAACAGTATATCAGCTACAATTTTCCATTAGAGAAATTTCGGCATGCTTCCCAACACACCACGCTCTTAGGGTATTACGGACACGTTCTTTCAATCTATCACGACTCGGGAGTTTAATTCATTTGAGGTATTTGGAGCTTTGTGATTTTGAGATAAAATCCTTGCCTGACTCAATTTGTAACTTGCGGAAATTGGAAATCTTGAAATTGAAAGAGTTGCGCAAACTTATTTGTCTACCTGAACACTTGGCTTGCTTACAGAATCTGAGACATCTTGTCATTGAAAATTGTGATTCATTGTCATGTATGTTCCCTAACATTGGAAAATTATCCTGCTTGAGAACATTAAGCGGATACATTGTCAGTTCAAAGATAGGGCATAGCTTGGCAGAATTACATGATTTAAAACTGGGAGGAGAGATGCACATCACAGGCCTCGAAAATTCTGGAAGTTCATATGAAGCTCAAGAGGCCAATTTGAAAGGTAAAGAGGACCTCCGCGAATTATGGTTGACATGGAATAACAAGTTTCATGCTACTAACCCCGATCAAGTACTTGAAGCGCTTCAACCTCACTCAAATCTTAAGAAGTTGAGAATATATGGCTATGCGGGACTAAAATCTCCGAGCTGGATTGGAATGCTCAACAATTTAGTTGATTTTCAACTTCATCATTGCAATGAATGCTTGCAACTTTCATCGCTTGGTAGACTTCCATCTTTAAGAAAACTTAAATTACGGTATGTGAATAATATCCAGTGTATGGATGATGATGAATCTTACAATGGTGTGGAGGTGAAAGCTTTCCCGTCTTTGGAGCAACTCTCATTATATGATTTACCCAAGTTAGAGATGTTGTTGAAAGTGGAAAGAGGGGAGATGTTTGCCCGTCTTTGTAGTTTGCGAGTTAGAAGGTGTCCTAAACTTGAGTTGCCATCATGCATTCCATCACTTACAAGCCTCTATTTATGCGAGTATACAAATGAGCTACTGAGGTTTTTCTCCCGTTTCACTGGTATTACCTCCCTCTGCCTTAAGAATGGCCAAGAAGACCTGCCATCCCTCCCAGTAGAATCACTGGCTTGTCTTAAAAATCTGGACATATATGCTTTCCCAAGATTAAAGGAGTTACCAGGTGAACTCTTCAACAATCTAATCGCTTTGGAGCATCTGGAAATCCGTCGGTGTTGGGAAGGTTTTCGCTCCCTTCGAACTCTAGAGTTATATGATTGTAGTGGATTGAGATCCTTGCCGGATGGAATTCAACACCTCAATGCTTTTGAGGACCTGCGAATAGTTCGGTGTGGTGAGTTTGAGTGTTTACCAGAGCAAGGTTGGGAAGGTCTTCGCTCCCTTCGAACTCTCCACTTTTCAAATTGTGAAGGATTGAGATCCTTGCCGGATGGTGTTCGACACCTCACTTCACTTGAGACTCTAACTATTTGGGGATGCCCAACATTGAAGGAGCGGTGTAAAGAAGAAACTGGGGCGGATTGGTACAAGATAGCTCATGTTCCACAACTAGAAATTAAATGA 3027 0.4011 MLGYGGGEDWGFVFWILISLLGAVFENLLSMVRNEFATISGIKGKAEKLSRTLELIKAIVEDAEEKQITNRSIKVWLQQLKDAVYILDDILDECSIESLRLGGFSIIPQPQIYGRQDDKEKIVEFLLSQERDSDFLSVYPIVGLGGMGKTTLSQMVYNDNRVSDNFNPKTWICVSENFSVKRICCSIVESVTGEKYDALGLDVIERKVQTLLQSKRYLLVLDDVWNRNQEMEFGLSQEKWNQLKSVLLCGSKGSSVLVSTRDMDVAAIMGTCQAHCLRGLSVDDCWLLFKQYAFGANNEERVELVAIGKEIIKKCGGSPLAARALGGLLHSRNEEKEWVEVKESRLWNLQNERCIFPALRLSYFHLTPTLRQCFAFCAIFPKYTFIDKEDLIFLWMANGFISSRENMEAEHVGNMIWNELYQKSFFHIIHISDEGDTTFIMHDLVHDLAQSIMGNECVILKNANMTDLSSSTHHVVLDPSSEKLSFNKGTFEKVESLRTVYQLQFSIREISACFPTHHALRVLRTRSFNLSRLGSLIHLRYLELCDFEIKSLPDSICNLRKLEILKLKELRKLICLPEHLACLQNLRHLVIENCDSLSCMFPNIGKLSCLRTLSGYIVSSKIGHSLAELHDLKLGGEMHITGLENSGSSYEAQEANLKGKEDLRELWLTWNNKFHATNPDQVLEALQPHSNLKKLRIYGYAGLKSPSWIGMLNNLVDFQLHHCNECLQLSSLGRLPSLRKLKLRYVNNIQCMDDDESYNGVEVKAFPSLEQLSLYDLPKLEMLLKVERGEMFARLCSLRVRRCPKLELPSCIPSLTSLYLCEYTNELLRFFSRFTGITSLCLKNGQEDLPSLPVESLACLKNLDIYAFPRLKELPGELFNNLIALEHLEIRRCWEGFRSLRTLELYDCSGLRSLPDGIQHLNAFEDLRIVRCGEFECLPEQGWEGLRSLRTLHFSNCEGLRSLPDGVRHLTSLETLTIWGCPTLKERCKEETGADWYKIAHVPQLEIK* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2870 1008 Gene3D Ribonuclease Inhibitor 481 823 IPR032675 -
Lja5g2870 1008 PRINTS Disease resistance protein signature 944 960 - -
Lja5g2870 1008 PRINTS Disease resistance protein signature 138 153 - -
Lja5g2870 1008 PRINTS Disease resistance protein signature 315 329 - -
Lja5g2870 1008 PRINTS Disease resistance protein signature 211 225 - -
Lja5g2870 1008 Gene3D - 362 452 IPR036388 -
Lja5g2870 1008 Gene3D - 21 107 - -
Lja5g2870 1008 Gene3D - 279 361 IPR042197 -
Lja5g2870 1008 SUPERFAMILY L domain-like 441 818 - -
Lja5g2870 1008 Gene3D Ribonuclease Inhibitor 824 992 IPR032675 -
Lja5g2870 1008 Gene3D - 108 275 IPR027417 -
Lja5g2870 1008 Pfam NB-ARC domain 116 344 IPR002182 GO:0043531
Lja5g2870 1008 SUPERFAMILY L domain-like 795 985 - -
Lja5g2870 1008 Coils Coil 46 66 - -
Lja5g2870 1008 Pfam Rx N-terminal domain 21 101 IPR041118 -
Lja5g2870 1008 PANTHER DISEASE RESISTANCE PROTEIN RP 46 925 IPR044974 GO:0006952
Lja5g2870 1008 CDD RX-CC_like 26 97 IPR038005 -
Lja5g2870 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 377 IPR027417 -
Lja5g2870 1008 PANTHER OS05G0414200 PROTEIN 46 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2870 Lja-Chr5 56403970 56407753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2870 141 614 WRKY Transcription Factor Family AT5G45050 23.608 5.96e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2870 - - lja:Lj2g3v2925200.1 1124.77