Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2867 ATGAAGTCCAATGCATCTGCATCTGATATGTGCAAGAGCGATTTTCCTCAAATTCTATGTTCTTCTGCAATCACATTAAGGTCTGGAAGGTCTTCTGACTATGTTATGTTTCCAAGGAGTGCTGATACATACCACAATTTATATAATGGCGCATTGTCCAGAAAACAAATAACAACAATCCAGGATGGTTCCAACACTCCGCACAAAGGTTTTACCGGTATTTCACAAAACAACTTTCATGAACGAGTGAAACCTAAGGCTACCTATATGACTGCAACAAACATCGGTGGTGCGCACATAGATGTTGAAAGTCAGCATATCCCTCATTTCCTTCATTCTCCAAAAAGGCATGGAAACTTATCAATTGATCACTCCCCCTCACAAACTCCAACAAGCCTTCTAAGAGACCATGCATGCATCAAAATGAATAATGCAAAGGAAGGTCTAGTAGGAGCAGATGCAGCTTCCTCTAATTTTGAGCTTAGGCTTGGTCAACCACCTCAGACAGTAAATACAGTTCCATCACTGTTTAATGCCCTAGCCAGTCCTTCAAAATTGCAACCTCAGGAGCACATGATTAATAGTGCAGACCTCAGCAGGGAGGAGAAATTCCAGAATAATATTGCCTATGCTGCTAGCTCATTGAAAATGGTTGAAGAACAACCTCAGTTTAGAGCTACGAACTATTTGTCTGGTGTTAATAATGCTTCAGCTACTGCTAGAGCTAGATCACAAAATGTAAATGTGGCTAAGAGTTTATTGTTTTCACCATTTCCACAATTTAATCATCAGCCGAACGGAAAGACAAAAACAAGCGAAATTTTAGTGAATGATAGTGGGCCTATCATGCACAGGAAAGGGCATTCTGAATGTTGTAACATGCAGCTTAGTCCTACTAATGTTCTCTGTAATAGTAATGGTCGTGCAGAAAGGGAATCAAATAATTCTGCACAAGTATCTAATAACTATTTGGCCAATGATAAGGGTGTGAGCTTTGCTAAAGACTGTTGTGCCAAAATAAATTCAGAATTTGGAATCAGTCAGTTCATGGATCTTGACTCCATCACAAGAGCTGTTAGTGGTAGTGATAGTTATATTTCATCTGTTAATGTAAGGATCAATGAATCAAGCCTGTCACCAAATACTTCTGCCAATACAAATTTTTTCCAAGGTTCAAAAAATAAATCTTCTTTTGGACAAGACAATCACGAGACTTCAGGGACAGCCATTGCATTTGAGGGAATTTTGAATGGGCTTCCCAACCATTTTTCAAGCTCTACGGCAAATCAGACACCTACTTTTCTGCAAAAACAGGATATTAATATGAATACTTGTTTGCTTGATGAAAATATGAGGTTGCTTGCGAAGACACAGATACTGGAATTATCACAGCAGCAACATGCATTGTCTTTTCATCATATGAATCAAAAGCAAGGGAGATCCAGCAATATTTCAAAAGCTCAGCACTATATCTATGAGACCTCAACATCTGAACAGGGTACTTCTGGTGTGTCATTGACATTGCCCCAAAATAGAGGGTTTTGTGGAAATGATGATGGTTTTAACAAACAGGCTTCCCTCGTAGGACTGAACAAATATTGTCTCTCTGCATTGGGACCAATTCCTTTACATTCTGTACAAAAGGAATCACAATGTAAATGTTCCTGTGATCTTCGCCATGATGAGCCATCGTTAAGCCTTGGAATAAGCAAAGACAATATCAGATCATGTTCATGTGAAAAATGCTCTGAGCAACCATCAGATACACATTTGGTAGACAAATGCACTTGTGCTGCTCGGGTGAACTTTTCTGGAAGAAAATTTTACTTGGGAATTGAGCCCTCTCATTATATCTTAAAACAGCAATTTGAAATTGCCAGTGGTGAAACTTCCTTAAAGAGAGCTTCCAAATGTAAAAGAGATCAGAATGCTTCCAAGGGTGAAAATATCCACTTTGAGCAAGATGGGAAGTTAAATGGCCAATGCTCAATCAAAATTGGCACTCAGACACCTCAATGGAGAGATGTGCCAAGTAAGGTCAGGAAAGCAGCTTGTGGTGCATTGTCTTCAGACCAGAGAGATACTGTTTTGGATTCCAAAGGAAAAGACAGTATTCAACATGGAAACTTCTGTGCCAATCGCTTCAAAAGAAATATTCATAAGGTAGACTGGTTGAAAGAGCAAGAAAATTTTAATGCTTCTTCAGGATATTCTGCTCATGTGGTATCTCAGGCATCTGCAGAGGCCAGCAAGGTTGATTCTTGTACTGTTGATGTGGTAGACACTGGTTGTGGCGACAACCTTATAGTTGACGAGGGATCAGGAATTGATAAAGGCTGGTCATCTGATGTGGCTGAAAATGAAATAAGTTCTGAGCTTCTAAGCTTAACGAGTGGAGGTTACTTGAGAAATGGTTATCTGAGAGGCTCAAATGATCAAACTTGTCACAGCCCCCTTGATGAGCATAAAGTATCAGATTCTTTGATGTGGAAAAAAGACCGGGATCAAAATCACATTGTTCTTTCTGCTAATTGTCAAGCCAATCAATCTGAGAATGTCAAGAAAGGCTTAAAAGGTAAAAAGCGAAAGAGAAATGAGAAGACGATGTTAGACGCTTCACTGCCTTCGGGAATCTCTTCCTTATTGGATAATAACGAGGATGGTGAAAGTACTGTACTTTTTAAGACCCATTCAAGTTTGTCCAAAGTAACACAAATGTACTTTTCATGTAGCCACCAAAGATCATCTAACAAGACTTCTATTTCTCAGCCTAGTACCAAACAAAGACATGCTGCATTTTCATCCAAATTCCTTTCTTGTAATAATCATCCAAGCAAAAACCTCAGTGACAAAGATAGCCATGACTCAGAATCAAATATCGATGCTAGGTTTCAAACATTGCCTGAAGTTTCTGGAATAAATAAATTGAAAAAGGGTTTCACTTCTGATTGTTTTGGGAACTCTCAAATGCCAGATCTATCCTATACAGAACATGGAAATGCTAAGCTGAGGTCATTCAATAGCAGGAAAGCAAATGCTCATAGAACAACAAGGCCAGTTGTATGTGGAAAGTATGGTGAGATATCTAGTGGACACTCGGCTATAGAAGAATCAAAACCAGCTAAAATTGTTCCTCTCAGCAAGGTTCTTAACACTTCAAAAAGATGTATGGTCCCTACAAATGGCAAATCTAGACTAACTTCAAAAAAGAACCGGAAGAGATGGAAGTTCGGTACCAGTAGCGGGCATTACTGTGGGCAACCTGGTTTAAAAACTGAGGAAGATGATGAAACCCATAACACAACGATCTGCAATGAATCAAACATTGATATGTCAATGGAAGATTTGGTGAGGGGCAGCAAGCCATATGTTATGTATAAAGGGATGAAAGATGATACCAAAACTACGGAGTGTGATAAGATTGTAAATAGAGCTGATGCTCAATTGAAGGTAAAGAAAAAGGAAATTCGGAAACAGCGAAGCATTAATGAACTCACTGCTAAAGAGAATTATTTCCCTGAGAAACGCCCACTCACGTATGATCCTATTGATGAGATGGACAGTCGACAAGAAAGGGAATTTTCCTGTGCCAGGACAGACGGTTACAAGGGCCGTAGATTGGATGGTTTGCAGAATAATCATTACAGTGCCTTAAAAGCCAAGGGGGCATGCCTTGTTCCTGAGGAGCAGTTAAATGCTTGGATTCACATTAATGGGCAGAAATTGTATTCACAGGGACTCCCAAAATTTCCAGATTCAGATATTGAGCATGATTGTAGGAAGGAATATGCCCGGTACAAGCAAGCAAAGTGCTGGAAACACCTTGTTGTATACAAATCTGGGATACATGCTCTTGGTCTCTACACTTCTCGATTCATTTCTCGAGGTGAAATGGTTGTCGAGTATGTTGGTGAAATTGTGGGGCTACGTGTGGCTGATAAAAGAGAAAGTGAATATCATTCAGGAAGGAAACTGCAGTACAAGAGTGTCTGCTACTTCTTTAAGATAGACAAAGAACATATTATAGATGCCACAAGGAAAGGGGGGGTGGCTCGATTTGTTAACCACTCATGCCTGCCAAATTGTATTGCAAAAGTGATTACTATAAGGCATGAGAAGAAGGTTGTCTTCTTTGCAGAGAGGGACATATTTCCTGGTGAAGAGATTACGTACGACTACCACTTTAACAATGAAGATGAAGGAAAGAAGATTCCATGTTATTGCAATTCAAAAAATTGCAGGCGCTATATGAACTGA 4257 0.3953 MKSNASASDMCKSDFPQILCSSAITLRSGRSSDYVMFPRSADTYHNLYNGALSRKQITTIQDGSNTPHKGFTGISQNNFHERVKPKATYMTATNIGGAHIDVESQHIPHFLHSPKRHGNLSIDHSPSQTPTSLLRDHACIKMNNAKEGLVGADAASSNFELRLGQPPQTVNTVPSLFNALASPSKLQPQEHMINSADLSREEKFQNNIAYAASSLKMVEEQPQFRATNYLSGVNNASATARARSQNVNVAKSLLFSPFPQFNHQPNGKTKTSEILVNDSGPIMHRKGHSECCNMQLSPTNVLCNSNGRAERESNNSAQVSNNYLANDKGVSFAKDCCAKINSEFGISQFMDLDSITRAVSGSDSYISSVNVRINESSLSPNTSANTNFFQGSKNKSSFGQDNHETSGTAIAFEGILNGLPNHFSSSTANQTPTFLQKQDINMNTCLLDENMRLLAKTQILELSQQQHALSFHHMNQKQGRSSNISKAQHYIYETSTSEQGTSGVSLTLPQNRGFCGNDDGFNKQASLVGLNKYCLSALGPIPLHSVQKESQCKCSCDLRHDEPSLSLGISKDNIRSCSCEKCSEQPSDTHLVDKCTCAARVNFSGRKFYLGIEPSHYILKQQFEIASGETSLKRASKCKRDQNASKGENIHFEQDGKLNGQCSIKIGTQTPQWRDVPSKVRKAACGALSSDQRDTVLDSKGKDSIQHGNFCANRFKRNIHKVDWLKEQENFNASSGYSAHVVSQASAEASKVDSCTVDVVDTGCGDNLIVDEGSGIDKGWSSDVAENEISSELLSLTSGGYLRNGYLRGSNDQTCHSPLDEHKVSDSLMWKKDRDQNHIVLSANCQANQSENVKKGLKGKKRKRNEKTMLDASLPSGISSLLDNNEDGESTVLFKTHSSLSKVTQMYFSCSHQRSSNKTSISQPSTKQRHAAFSSKFLSCNNHPSKNLSDKDSHDSESNIDARFQTLPEVSGINKLKKGFTSDCFGNSQMPDLSYTEHGNAKLRSFNSRKANAHRTTRPVVCGKYGEISSGHSAIEESKPAKIVPLSKVLNTSKRCMVPTNGKSRLTSKKNRKRWKFGTSSGHYCGQPGLKTEEDDETHNTTICNESNIDMSMEDLVRGSKPYVMYKGMKDDTKTTECDKIVNRADAQLKVKKKEIRKQRSINELTAKENYFPEKRPLTYDPIDEMDSRQEREFSCARTDGYKGRRLDGLQNNHYSALKAKGACLVPEEQLNAWIHINGQKLYSQGLPKFPDSDIEHDCRKEYARYKQAKCWKHLVVYKSGIHALGLYTSRFISRGEMVVEYVGEIVGLRVADKRESEYHSGRKLQYKSVCYFFKIDKEHIIDATRKGGVARFVNHSCLPNCIAKVITIRHEKKVVFFAERDIFPGEEITYDYHFNNEDEGKKIPCYCNSKNCRRYMN* 1419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2867 1418 ProSiteProfiles SET domain profile. 1273 1394 IPR001214 GO:0005515
Lja5g2867 1418 SMART set_7 1273 1400 IPR001214 GO:0005515
Lja5g2867 1418 Gene3D SET domain 1129 1418 IPR046341 -
Lja5g2867 1418 MobiDBLite consensus disorder prediction 851 882 - -
Lja5g2867 1418 Pfam SET domain 1286 1393 IPR001214 GO:0005515
Lja5g2867 1418 SUPERFAMILY SET domain 1234 1414 IPR046341 -
Lja5g2867 1418 CDD SET_SETD1-like 1275 1414 - -
Lja5g2867 1418 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 1180 1418 - -
Lja5g2867 1418 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 39 1171 - -
Lja5g2867 1418 ProSiteProfiles Post-SET domain profile. 1402 1418 IPR003616 -
Lja5g2867 1418 SMART PostSET_3 1402 1418 IPR003616 -
Lja5g2867 1418 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 1180 1418 - -
Lja5g2867 1418 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 39 1171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2867 Lja-Chr5 56369822 56377730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2867 1275 1418 C2H2 Transcription Factor Family AT2G23740 31.098 1.89e-15 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja5g2867 SET 2.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2867 - - lja:Lj5g3v0528960.1 2876.27