Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2861 ATGGGGAAACCGGCAGGAAAAAAGAAGGATCATGAAATCACCGCCACCGCGAAGGGCAACAACAACAACAACAACACTAGCAAGAAAGGTTGGGAACGCGCTGCCACCGCCGTGGCGTCGTCAAAAGCCGCGGCTCTCGACGACGACACGGCGATGTTCATAAACATGTCGCAGGAGCTGCGGGAAGAAGGGAACCGTCTCTTCCACAAGAAGGATCACGAAGGCGCGATGCTCAAATACGAGAAGGCATTGAAGCTTCTCCCCAAGAGCCACATCGATGTGGCTCACCTCCACACCGCCATGGCCATGTGCTACATGCAGCTAGGGCTCGGGGAGTATCCTCGTGCTATTAACGAGTGCAATCTTGCGCTTCAGGTCTCGCCTCGTTACAGCAAGGCCCTCCTGAAGAGAGCACGTTGTTACGAGGCGCTGAACCGATTGGATTTGGCTATGAGGGATGTGCGCGTTGTGCTCAACTCCGAGCCGAATAATCTCACCGCGTTAGAGATTCTCGATAGCTTGAGGGTTACCATGGATGAGAAGGGGATCACCTTGGATGAGACTGAGATTGCCCTGGCTGCTTTGCAGCAGCAGCCGGAGCCTCCCGGGGCGCGGTTGAGGAAAGTGGTGAAGGAAAAGTTGCAGAAGAAGAAGAAATCATCACCTAGAGGGCAAGAAGATGAGAAAACAAAGGTGGTTGTTGAGAATGTTAAGGTTCATAAGGATAAGGATCACAACAAGGATAAGAATGTAAAGGTTGAGGATAAGGATGATAAGGAGTTTGTTAAGAAAGATAAAGGGGTTACCAGGACTGTGAAGTTGATATATGGAGAGGATATAAGATGGGCGCAGTTGCCTGTGAATTGTAGCATGAAGCTGGTGAGGGATGTGATAAAGGATCGGTTTCCGCGGTTGAAGGGTGTTCTTGTGAAGTATAGGGATAGGGAAGGTGATTTGGTTACTATTACTACTACTGCCGAGTTGAGGTTAGCAGAGAGCTGTCATGTGCTTGGGTCAATTAGGCTTTATGTTACGCAGGTGGATCCGGATCAGGAACCGTGTTATGATGAGACAACAACAAGTAGTAATAATGGTGACGTGGAAATGGAGAAGGGGGGTGTGAAAGGAAGCAGGAGTGTGGCTGAGAAGAAGACTACTGTGGAGGATTGGCTTGTCCAGTTTGCTAGGCTGTTTAAGAATCATGTTGGGTTTGATTCTGAATCGTATCTGGATATTCATGAGGTTGGAATGAAGCTGTATTCGAAAGCAATAGAGGAGGCGGTGACGACCGATGATGCTCAGGAGCTGTTTGAAATTGCTGCAAGTAAATTTCAAGAGATGGCTGCTCTGGCCATGTTTAATTGGGGGAATGTTCACCTGTCCAGGGCAAGGAGGCGGGTTTCCTTTCCGGAAGATGGGTCAAGAGAGGCTTCTTTTGAGCATGTTAAAGCTGCGTATGAGTGGGCTCAGAAGGAGTACAAGGAAGCAGAATTGAAGTATGAAGAAGCTATGAGAATCAAACCAGACTTTTATGAAGGACTTCTTGCTCTTGGGTATCAGCAGTTTGAGCAAGCAAAGCTCTGCTGGTGTTATTTAATAGCAAGCAAGAAGGATTTGGAAGCTGGCCCTTTCGAGGAGGTTCTGCAGCTATATAACAAGGCAGAGGACAGCATGGAGAAAGGCATGTTGATGTGGGAGGAGATCGAGGAGCAGCGGTTGAATGGACTATCCAAATCAGATAAATATAATGCAACGTTAGAAAAAATGGGTTTGCAGGGTCTTTTCAAGGATGTTTCTTCTGATGAAGCTGAGGAAGAGGCTTCAAGGATGAGGTTGCAGATATATCTTTTATGGGGCACCTTATTGTACGAACGATCTGTTGTGGAATATAAACTAGGACTACCAACATGGGAGGAGTGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTAGCTGGAGCTTCTTCAACTGACATTGGTGTCATGATAAAGAACCATTGTTCTAATGAAACAGCAATGGAAGGGTTCAAAATCGATGAGATAGTGCAAGCATGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCATCATTTAGACTTGAACCTTTGTTTCGCCGGCGTGTTCCAAAACTCCATTACATCCTGGAGCAGTTTTAA 2157 0.4701 MGKPAGKKKDHEITATAKGNNNNNNTSKKGWERAATAVASSKAAALDDDTAMFINMSQELREEGNRLFHKKDHEGAMLKYEKALKLLPKSHIDVAHLHTAMAMCYMQLGLGEYPRAINECNLALQVSPRYSKALLKRARCYEALNRLDLAMRDVRVVLNSEPNNLTALEILDSLRVTMDEKGITLDETEIALAALQQQPEPPGARLRKVVKEKLQKKKKSSPRGQEDEKTKVVVENVKVHKDKDHNKDKNVKVEDKDDKEFVKKDKGVTRTVKLIYGEDIRWAQLPVNCSMKLVRDVIKDRFPRLKGVLVKYRDREGDLVTITTTAELRLAESCHVLGSIRLYVTQVDPDQEPCYDETTTSSNNGDVEMEKGGVKGSRSVAEKKTTVEDWLVQFARLFKNHVGFDSESYLDIHEVGMKLYSKAIEEAVTTDDAQELFEIAASKFQEMAALAMFNWGNVHLSRARRRVSFPEDGSREASFEHVKAAYEWAQKEYKEAELKYEEAMRIKPDFYEGLLALGYQQFEQAKLCWCYLIASKKDLEAGPFEEVLQLYNKAEDSMEKGMLMWEEIEEQRLNGLSKSDKYNATLEKMGLQGLFKDVSSDEAEEEASRMRLQIYLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGASSTDIGVMIKNHCSNETAMEGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRVPKLHYILEQF* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2861 718 SMART PB1_new 269 347 IPR000270 GO:0005515
Lja5g2861 718 SUPERFAMILY CAD & PB1 domains 269 359 - -
Lja5g2861 718 MobiDBLite consensus disorder prediction 1 15 - -
Lja5g2861 718 Pfam PB1 domain 269 346 IPR000270 GO:0005515
Lja5g2861 718 MobiDBLite consensus disorder prediction 353 378 - -
Lja5g2861 718 PANTHER PROTEIN CLMP1 1 717 IPR044517 -
Lja5g2861 718 Gene3D - 259 346 - -
Lja5g2861 718 PANTHER PROTEIN PHOX4 1 717 - -
Lja5g2861 718 ProSiteProfiles TPR repeat profile. 57 90 IPR019734 GO:0005515
Lja5g2861 718 SUPERFAMILY TPR-like 430 525 IPR011990 GO:0005515
Lja5g2861 718 CDD PB1 271 344 - -
Lja5g2861 718 Coils Coil 486 506 - -
Lja5g2861 718 MobiDBLite consensus disorder prediction 210 230 - -
Lja5g2861 718 SUPERFAMILY TPR-like 54 174 IPR011990 GO:0005515
Lja5g2861 718 MobiDBLite consensus disorder prediction 353 367 - -
Lja5g2861 718 ProSiteProfiles PB1 domain profile. 269 347 IPR000270 GO:0005515
Lja5g2861 718 SMART tpr_5 131 164 IPR019734 GO:0005515
Lja5g2861 718 SMART tpr_5 477 510 IPR019734 GO:0005515
Lja5g2861 718 SMART tpr_5 95 130 IPR019734 GO:0005515
Lja5g2861 718 SMART tpr_5 57 90 IPR019734 GO:0005515
Lja5g2861 718 Gene3D Tetratricopeptide repeat domain 54 181 IPR011990 GO:0005515
Lja5g2861 718 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2861 Lja-Chr5 56310137 56315392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2861 47 164 Calmodulin-binding Proteins AT3G25230 29.921 4.50e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2861 - - vra:106765155 1008.05