Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2844 ATGGCTTCACCCAACATCATCGTTCCGACCAAAGAGGAAAGGAACCGGATAATACTTGGTGATATTGGAAACGGAAGAACCCTAAGAGAAGTTGATATCAACACCAATTTCTGTCACCAACCACTTGCCACTCAAAAGAAACCGAATGAGCAAATTGTTGACAATATTGATGCTGCTGATGTTCACAATGAGCTTGCTGCTGTGGAATATATTCAAGACATATACAAGTTCTATAAGACGGTTGAGAATGAGAGCCGTCCCGATGCCACCTACATGGACTCACAACCTGAGATAACTCAGACAATGAGAGCTATGCTTGTTGATTGGGTGATTGAAGTTCATGTTCACATGACCAGGTTTCATTTTTCAATTGAAACCCTCTACCTCACCATTAACATAGTTGATCGTTTCCTATCACTCGTGACTGTGCCAAAGAGGAAATTGCAATTGGTTGGCATCACTGCCATGCTCATGGCATCCAAGTATGAAAACAACTCCCTGGCCCCTGAGGACTTGAGTGTGCCTACACCATTTGTTTTCCTAGTTCGCTTTATCAAGGCCTCCTCAATTCGAGATCCGGACGAGGCAGTAGAAAACATGGCACATTTTCTTTGTGAGCTGGGAATGATGCATTATGCTACCTTGCAGCACTGTCCATCAATGATTGCTGCCTCAGCAGTGTTTGCAGCTAGATGCACTCTCAACAAGAGCCCTTCTTGGAATCACACACTTGAGATGCACACTGGTTACTCACAACAAGAACTTATGGATTGTGCTACACTCTTGTTCCTTTCTTTAAAGCTTACAACTGCAAGTATCTATTATGAATTCAATTCGGAGACAAATGCTTTAGAAACAATGCAGGCAGTTTTAAATCGACACAGCAAGCTACAGCCTCATTTTCATCAGTGA 912 0.4276 MASPNIIVPTKEERNRIILGDIGNGRTLREVDINTNFCHQPLATQKKPNEQIVDNIDAADVHNELAAVEYIQDIYKFYKTVENESRPDATYMDSQPEITQTMRAMLVDWVIEVHVHMTRFHFSIETLYLTINIVDRFLSLVTVPKRKLQLVGITAMLMASKYENNSLAPEDLSVPTPFVFLVRFIKASSIRDPDEAVENMAHFLCELGMMHYATLQHCPSMIAASAVFAARCTLNKSPSWNHTLEMHTGYSQQELMDCATLLFLSLKLTTASIYYEFNSETNALETMQAVLNRHSKLQPHFHQ* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2844 303 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 172 266 - -
Lja5g2844 303 PANTHER CYCLINS 172 266 IPR039361 -
Lja5g2844 303 PANTHER CYCLINS 46 170 IPR039361 -
Lja5g2844 303 Pfam Cyclin, N-terminal domain 73 167 IPR006671 -
Lja5g2844 303 Pfam Cyclin, C-terminal domain 175 266 IPR004367 -
Lja5g2844 303 Gene3D - 171 298 - -
Lja5g2844 303 CDD CYCLIN 102 172 IPR013763 -
Lja5g2844 303 SMART Cyclin_C_2 175 290 IPR004367 -
Lja5g2844 303 CDD CYCLIN 173 262 IPR013763 -
Lja5g2844 303 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 46 170 - -
Lja5g2844 303 Gene3D - 88 165 - -
Lja5g2844 303 SUPERFAMILY Cyclin-like 174 266 IPR036915 -
Lja5g2844 303 SUPERFAMILY Cyclin-like 62 166 IPR036915 -
Lja5g2844 303 SMART cyclin_7 108 178 IPR013763 -
Lja5g2844 303 SMART cyclin_7 179 264 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2844 Lja-Chr5 55960370 55963100 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2844 55 265 Core Cell Cycle Gene Families AT3G11520 51.250 5.50e-78 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2844 K21777 - gmx:547919 287.73