Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2839 ATGGGAGAAACAAAGGACGAAGCATACGAGGAAGAGCTTCTTGACTACGAAGAGGAAGAAGACAAGGCAACCACTGACTCTGTCGGAGCCAAACTCAACGGTGAAACTGCCAAGAAGGGCTATGTGGGGATCCACAGTTCAGGATTCAGAGACTTTCTTCTGAAGTCAGAGCTTCTTAGGGCTATTCAGGACTCAGGATTTGAGCATCCTTCTGAAGTGCAACATGAGTGCATTCCTCAAGCAATCCTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTGTTCTCTCAACTTTGCAGCAGATTGATCCTGTTGCAGGGCAAGTTTCTGCTCTTGTTTTGTGTCATACTAGGGAACTAGCATACCAGATATGCCATGAGTTTGAGAGGTTCAGCAAACACTTGCCTGATCTCAAGGTTGCTGTTTGTTATGGTGGAGTCAATATTAAAGTTCACAAGGATCTGTTGAAAAATGAATGCCCTCATATTGTTGTTGGTACTCCTGGAAGAATCCTAGCGTTGGCCAGGGATAAGGAACTTTCGCTGAAGAATGTTCGGCATTTCATTTTAGATGAACTAGTGAAAGATGTGCAAGATATTTTCAAGCTGGCTCCCCATGACAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAATGAAATCCGTCCCGTCTGCAAAAAATTTATGCAGGATCCAATGGAAATTTATGTTGATGATGAAGCGAAATTGACCCTTCATGGACTTGTCCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACAGGAAGTTGAATGATCTTCTTGATGCACTGGACTTCAATCAGATTGTTATCTTTGTGAAAAGTGTCAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTCCCGTCTATATGCATTCATTCTGGAATGTCCCAGGAAGAAAGGTTGAAGCGTTATAAGGGTTTTAAGGAGGGGCAGACAAGGATTCTTGTAGCAACAGATTTGGTTGGTAGGGGAATTGACATTGAACGTGTGAATATAGTCATAAATCATGACATGCCTGATTCTGCAGACACATATTTGCACAGGGTTGGCCGAGCTGGAAGGTTTGGCACCAAAGGTCTTGCAATTACATTTGTTTCATGTGCTACAGATGTTGATGTTCTCAACAATGTTCAATCCAGGTTTGAGGTGGATATAAAACAGCTTCCTGAGCAGATTGATACATCTACCTACAGTTTACTTCACGTCTATGGGGAGCTCTACAGCAAGCTTTGGGGTCCAAGCTGA 1302 0.4293 MGETKDEAYEEELLDYEEEEDKATTDSVGAKLNGETAKKGYVGIHSSGFRDFLLKSELLRAIQDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSKHLPDLKVAVCYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKELSLKNVRHFILDELVKDVQDIFKLAPHDKQVMMFSATLSNEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGQTRILVATDLVGRGIDIERVNIVINHDMPDSADTYLHRVGRAGRFGTKGLAITFVSCATDVDVLNNVQSRFEVDIKQLPEQIDTSTYSLLHVYGELYSKLWGPS* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2839 433 CDD DEADc_DDX39 46 244 - -
Lja5g2839 433 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 28 414 - -
Lja5g2839 433 SMART ultradead3 66 258 IPR014001 -
Lja5g2839 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 389 IPR027417 -
Lja5g2839 433 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 28 414 - -
Lja5g2839 433 Pfam DEAD/DEAH box helicase 72 228 IPR011545 GO:0003676|GO:0005524
Lja5g2839 433 Gene3D - 43 250 IPR027417 -
Lja5g2839 433 SMART helicmild6 294 375 IPR001650 -
Lja5g2839 433 Pfam Helicase conserved C-terminal domain 268 375 IPR001650 -
Lja5g2839 433 Gene3D - 251 418 IPR027417 -
Lja5g2839 433 MobiDBLite consensus disorder prediction 1 27 - -
Lja5g2839 433 Coils Coil 6 26 - -
Lja5g2839 433 MobiDBLite consensus disorder prediction 1 22 - -
Lja5g2839 433 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 47 75 IPR014014 GO:0003724
Lja5g2839 433 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 78 242 IPR014001 -
Lja5g2839 433 CDD SF2_C_DEAD 255 384 - -
Lja5g2839 433 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 254 415 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2839 Lja-Chr5 55895463 55906839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2839 1 416 Eukaryotic Initiation Factors Gene Family AT5G11200 76.395 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2839 K12812 - gmx:100808957 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2839 5 55895463 55906839 Lja5g2839 5 55895463 55906839 ECH
Lja1g3873 1 48866668 48873117 Lja5g2839 5 55895463 55906839 ECH
Lja5g2839 5 55895463 55906839 Lja1g3873 1 48866668 48873117 PCT