Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2833 ATGATGGATTCTCCAGAACCTTCCAAGATCAATCGCAGTTCTTCTGCTTCTGCTCTCAATGCCTCCGTCAATACTCCTTCATCCGAATCCCCTCAAGTTCAAGAGTCCCCATTTTTTAGATTTGCCAGCAATTTATCTCCGATGAGGCCTGCTAAGGCTTGTCATGTGGCACCAAGTTTTCTTGGGCTTAATTCCCCACCTCTGGTGTTCAAGTCGCCACGTGTTAATTGTGACCGTGAATCGCGGTACTTGGAAAGGCCTCAAGGCACTCATTTATCCAGTGTAGAAATGTCTCAAAGTTACAATGGAGGCAACAGTCTTCGTGTAGCTCCTGGTGATTCCAATGAATCAAATTCTCAACTGCCTCTGCCAGAGAGGTTTGCAACTGACACTCAGCAGGATATTGGCCTCAGGAATGATACGAATACCCAAAGCTGCAGTTCTCCAACATCTGTTGATGAATATTTAGCTGATCCTGGGGATACTGATGAAATGTATTCAGTCAACCCAGACGTTGAACAATCTACATATGCAGTTGAATCTGAACCAAGCAACTTAACTCGGACAAAGAAAGTTATATTAAAATGCAATGGGAATGATGATCCTGGTGATAAAGCAGAAGAGCCTTCGCCTTTGTCAGAGGAATCTAATGAGATTCATCAAGAAAGGCCAGTTGAAAACCCTGAAACAGAAGGGGACAAAAGAGTTGTTGAACGGGTTTCTCAAGAGCACACAAAACTTGAGTCCAATTTAGCTGCAGATGTTTCTCATAATTCACTTACCCAGCATGCAGGAAATGGACCGGATCATAGTGATTGCGCAGCTCAATCAATGTCTGATCCTCTGCAAGATGTTAAAGAATCTAAAGATTGCCATGAGATGGTATCGACCTTACATGTAAGGCAAGAGAATATTTCCCAAGATGGTTCTGAGGCTAGTCTGAAGTACCATGGCATTCGTCGGCGCTGCCTAAAATTTGGGGAAGCTGCCTCCAGTGCTCTTGGAAGTAATATGTCTAACATGAAACTGAATGCAACTTCAAGCCAAATGCATTTTGTCAACCCCTTCAAACCTGTCAGTTCCTTGTATCTTCAACGAGGCATTCCGGAGACAGGTTCCAAGCCAGCAGGTATTGGGTTACATTTAAATAGCATTATAAATGGAATGCCACCTAGTTGCGCTTCAACTACGGGTATGAGATCATCAGATGTTTTACAAGGGATGCAATCCACATCTTCAATAAGTTTAAATAAAGTGGAGAACATGAAGAAATACGTAATATCATCAAATATGGATCGGCAACCATTAGTTGATAATAGAAATGAGATCCATGAAACAGATGCTTCATTAGCTGCAGATTATTTTTCTCCTAGCTTGAAAGAACCTATTGCCTTGTATCCTGCAAGTGGCCATGATAAGAGGAAACTAAGCCCTACAGATGCTGGAAATTCTGAGGGACTCGACCAACATACCCCGGGCAAGAAAAAGAAGAAAACATCAAGCACTGCAGATGGTAATGGCTGTAAGCGGTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTACTGTGACTGTTTTGCTGCTGGAGTCTTTTGTCTCGACCCTTGTTCTTGCCAAGACTGCTTCAATAAACCAGAATATGGGGAGAAAGTTCTTGAGACAAGGCAACAAATTGAGTCCCGAAATCCACTTGCATTTGCTCCGAAGATTGTGAAAAGCGCCACTAATGCCCCGTCAAATATGGAAGATGTAAATCTGACGACACCGTCATCAGCAAGGCACACAAGAGGTTGCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAGTCTAATGTTGGATGCTCAAGTGGATGTCGGTGTGAGGGATGCAAGAATGTCTATGGCAAGAAAGAAGATTATGTTGCACCGGATCATGCTTTGAGTAAAGAAAGGGTGAGCAGTAATGTTGAAAAAGGGTCAGATAGCACCATGCTCAATAAACCGGAAATGGTGGCAAGCAGGGAAGATTTGTTCCAGAAAGAGTTCTATGATCAACATCATCTGTCACCTATAACGCCATCGTTGCAATGCTCTGACCAAGGCAAGGACATGTTCCCATCACACAGGAGTCTGATGTTAACTGACTCCTGTGATTCGAAAAGTTATGAGAACGTACAATCACCAGCACCACCATGTAATTCAGCTTCCTGCATACTTCAGCTCACTCCTCTGTCAAATCCTGATTCAACGTCTGGTGCTCCATCCATCCCAGCTAAACCTGTGGGGACAAGTGCTCCATCATCCCGAGTCTCTCATGGATGTGTTCGCCAATTATCTGGTGGCTCTCTTCGTTGGCGTAGTTCACCAGTTACCCCAAGGAATACCAACTTAGGTGAAGCACAACATTTACAGGGACTTGAATCAGATAGCAGGCTGTTTGATATTGTAGAAGATGAAACACCTGCTATATTGAAGGAAAGTTCAACTCCCACAAAGACTGTCAAAGCAAATTCCCCGATCCAAAAGCGAGTTTCTCCTCCACGTGTGATTGGATCAAGCTCCTCAGGAGGCTTGAGAACTGGCAGGAAATTCATATTGAAATCTGTGCCGTCTTTCCCACCATTGACCCCTTGCATGGATTCCAAAGGTAATGGCAATGAGGACGGCAATGTGGACTCGGGTAATGGTGCCACCAAGTGA 2694 0.4358 MMDSPEPSKINRSSSASALNASVNTPSSESPQVQESPFFRFASNLSPMRPAKACHVAPSFLGLNSPPLVFKSPRVNCDRESRYLERPQGTHLSSVEMSQSYNGGNSLRVAPGDSNESNSQLPLPERFATDTQQDIGLRNDTNTQSCSSPTSVDEYLADPGDTDEMYSVNPDVEQSTYAVESEPSNLTRTKKVILKCNGNDDPGDKAEEPSPLSEESNEIHQERPVENPETEGDKRVVERVSQEHTKLESNLAADVSHNSLTQHAGNGPDHSDCAAQSMSDPLQDVKESKDCHEMVSTLHVRQENISQDGSEASLKYHGIRRRCLKFGEAASSALGSNMSNMKLNATSSQMHFVNPFKPVSSLYLQRGIPETGSKPAGIGLHLNSIINGMPPSCASTTGMRSSDVLQGMQSTSSISLNKVENMKKYVISSNMDRQPLVDNRNEIHETDASLAADYFSPSLKEPIALYPASGHDKRKLSPTDAGNSEGLDQHTPGKKKKKTSSTADGNGCKRCNCKKSKCLKLYCDCFAAGVFCLDPCSCQDCFNKPEYGEKVLETRQQIESRNPLAFAPKIVKSATNAPSNMEDVNLTTPSSARHTRGCNCKRSMCLKKYCECYQSNVGCSSGCRCEGCKNVYGKKEDYVAPDHALSKERVSSNVEKGSDSTMLNKPEMVASREDLFQKEFYDQHHLSPITPSLQCSDQGKDMFPSHRSLMLTDSCDSKSYENVQSPAPPCNSASCILQLTPLSNPDSTSGAPSIPAKPVGTSAPSSRVSHGCVRQLSGGSLRWRSSPVTPRNTNLGEAQHLQGLESDSRLFDIVEDETPAILKESSTPTKTVKANSPIQKRVSPPRVIGSSSSGGLRTGRKFILKSVPSFPPLTPCMDSKGNGNEDGNVDSGNGATK* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2833 897 MobiDBLite consensus disorder prediction 1 35 - -
Lja5g2833 897 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 596 630 IPR005172 -
Lja5g2833 897 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 509 544 IPR005172 -
Lja5g2833 897 MobiDBLite consensus disorder prediction 195 276 - -
Lja5g2833 897 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 2 885 IPR044522 GO:0003700
Lja5g2833 897 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 2 885 - -
Lja5g2833 897 SMART CXC_2 593 634 IPR033467 -
Lja5g2833 897 SMART CXC_2 506 547 IPR033467 -
Lja5g2833 897 MobiDBLite consensus disorder prediction 7 35 - -
Lja5g2833 897 ProSiteProfiles CRC domain profile. 507 633 IPR005172 -
Lja5g2833 897 MobiDBLite consensus disorder prediction 489 503 - -
Lja5g2833 897 MobiDBLite consensus disorder prediction 87 123 - -
Lja5g2833 897 MobiDBLite consensus disorder prediction 744 771 - -
Lja5g2833 897 MobiDBLite consensus disorder prediction 825 897 - -
Lja5g2833 897 MobiDBLite consensus disorder prediction 246 276 - -
Lja5g2833 897 MobiDBLite consensus disorder prediction 195 245 - -
Lja5g2833 897 MobiDBLite consensus disorder prediction 85 123 - -
Lja5g2833 897 MobiDBLite consensus disorder prediction 466 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2833 Lja-Chr5 55829086 55834685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2833 816 875 CPP Transcription Factor Family AT4G14770 49.206 1.64e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lja5g2833 TCR 5.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2833 K21776 - gmx:547664 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2833 5 55829086 55834685 Lja5g2833 5 55829086 55834685 ECH
Lja5g2833 5 55829086 55834685 Lja1g4570 1 59817525 59819554 PCT