Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2831 ATGAAGATATTTGGAATGTCTTATGATGATGGCCAGAAGGAAGAAGAAACAGATGAGGAAGGGAATGAGACCAATGAATTAGGTAGCCAATATAGCCTAACCGGCATCATTCTTCCTTCTCTCGGTTCCAGCGGTTACCGAAGGCATAAGCTCCGTCCTTATAGTATCTCTCCATACAATTGTCAATACAAGTTGTGGCAAAATTTTCTGGTGATATTGGTTTTCTACACTGCATGGGTGTGTCCTTTTGAATTTGGGTTCCTTGATAAAACAAAGGGTGGCCTTGCTGTAACTGACAACATTGTGAACGCTTTTTTTGCTTTTGACATTATTCTCACCTTCTTCGTTGCTTATCTCGACAAGCCTTCTTATATGCTCATCGACGATCGAAAGAGCATTGCTTTGAGATATGCTAAATCTGGGTTGATATTGGATGTTCTCTCTACCATCCCTTATGAAGTTGTAAAGGCACTGTTGCCAAAACATGGCAAAAAATTTGGCTACGTTTTCAACATTCTACGGTTGTGGCGTCTTCGTAGAGCTAGTGATATGTTTTCAAGATTAGAAAAGAATAGAAAGTATAACTACTTCTGGGTGCGCTGTTCAAAATTTACATGTGTAACTCTATTCTCTGTGCATGCTGGTGCCTGCTTTTTCTTTTTTACTGCTCAACGAAATAGTGACGCGAAATCAACATGGGTTGGCCTTATTAGTGATGCCGCTGACAGTAGTATGTGGGGAAACTATGCAACATCAATATATTGGTCCATAGTGACTCTTACTACAGTTGGTTATGGTGATTTGCATCCTGTAAATACAAGTGAAATGGCACTTGACATTTTCTATATGTTATTTAATCTTGGACTTACCTCGTATCTGATTGGTAATATGACCAACTTGGTTGTCCACTGGACAGATAAAACTAAAAGATATAGAGACACTGTCCAAGCTGCCTCAAATTTTGTTCAGAGAAACAATATACCTATTCGTTTGCAAGAACAAATATTTTCTCATTTGCTCACGAAGTACAGAACTGATTTAGAAGGATTGCAGCAACAAGAGATTTTTGACTCTCTTCCAAAAGCCATCCAGTCTAGCATCTCACATCACCTTTTCTATCCCCTTATTGACAAAGTTTATTTGTTTCATGGAGTGTCAGAAGACCTACTTTTTCAATTGGTCATGGAGATGAAGGCTGAGTACTTTCCTCCAAAGGAAGATGTGATTTTGCAAAATGAAGCGCCAACAGACTTTTATATATTGGTTGCTGGAGCTGCTGATCTTATTCATAAAAAGAATGGAGCAGATATTGTTGGTGAGGCTAAGACTGGAGATGTTATTGGGGAAATAGGAGTATTATGTTATAGTCCACAGTTGTTCACAGTTCGGACAAAGCGATTGAGCCAGCTTTTACGCTTGAATCGAACAACATTTCTAAATCTTGCTCATTCAAATTTTGGTGACGGAACAATAATCATGAACAATTTTCTTCAGCATTTGCAAGAATCACAAGATCCAACGATGAGGGAAATTTTGGTAGATACAGAGGCAATGTTGGCTCGAGGAAAAAAAATGGATCTGCCTATCAGTCTAATTCCTGCAACTTGCAGAGGTGATGATGTATTGTTGCATCAATTGTTAAGAAAAGGTTCAGATCCGAATGAAATAGATAAGAGTGGAAAAACAGCACTGCATTTTGCAGCTTCTATTGGCAATGAACATTGCGTAGCACAACTGCTAGAACACAAGGCTGATCCCAATATTCGAGATTTCAGTGGAAGTGTCCCATTATGGGAAGCAATGATGGGTAGGCATGAAAAAGTCATGAAACTTCTTCTAGACAATGGTGGAAATATATCATCCTCTGATGTGGGACATCTTGCATGCATTGCTGTTGAGAAAAATAACATTGAATTACTCAAGTACCTTGTTCAATGTGGTGGGGATGTGACACAACCCACAAGCAATGGAAACACTGCACTTCATGTTGCAGTATGTGAGGAAAACATGGACATACTAAATTTTCTTCTTGACCAAGGAGCAGATATTGATAAAGAAGATGGTAATGGTTGGACTCCAAGGGCTTTAGCAGATCATCAGTGCCATGAAGAAATACAAAATATATTCCAAAATATAGGGAAAAACAAAAGACCACATGTTATTCCTTCAATACCAAAGATTGGAAGGTCATTTGTGGCGAAGAGTCAAAGTGAACCCTTTATGCCAGGAATCTCCCAAGGAAGCATCCTTCCTAATCAAGAGTTGTCAGATAATCGTCAAAGAAGAAAGGTCAACCCTTTTCGTAACTCATTTTTTTGGATGATGTCAGCTGCAAATCATGATAAAAATGATTCTAGTACATCTGTAACCAATCACGCTACCCCAACAAACGTGAGTGAATTATCAGCCAGAGTTACGCTAAGTTGTCCAGAAAAGGGTGAGAATGCAAAAAAGCTTGTTTTCTTGCCAAAGTCCTTTCAAGAACTTCTACATATTGGCGCCAAAAAGTTTGACTTCTCTCCCACAAAACTTTTGACCAAAGAAGGAGCTCAAGTTGAAGACATAAATGTGATAAGAGATGGTGATTATCTCATTCTTGCACGAGATAGATCAGGATAG 2619 0.3883 MKIFGMSYDDGQKEEETDEEGNETNELGSQYSLTGIILPSLGSSGYRRHKLRPYSISPYNCQYKLWQNFLVILVFYTAWVCPFEFGFLDKTKGGLAVTDNIVNAFFAFDIILTFFVAYLDKPSYMLIDDRKSIALRYAKSGLILDVLSTIPYEVVKALLPKHGKKFGYVFNILRLWRLRRASDMFSRLEKNRKYNYFWVRCSKFTCVTLFSVHAGACFFFFTAQRNSDAKSTWVGLISDAADSSMWGNYATSIYWSIVTLTTVGYGDLHPVNTSEMALDIFYMLFNLGLTSYLIGNMTNLVVHWTDKTKRYRDTVQAASNFVQRNNIPIRLQEQIFSHLLTKYRTDLEGLQQQEIFDSLPKAIQSSISHHLFYPLIDKVYLFHGVSEDLLFQLVMEMKAEYFPPKEDVILQNEAPTDFYILVAGAADLIHKKNGADIVGEAKTGDVIGEIGVLCYSPQLFTVRTKRLSQLLRLNRTTFLNLAHSNFGDGTIIMNNFLQHLQESQDPTMREILVDTEAMLARGKKMDLPISLIPATCRGDDVLLHQLLRKGSDPNEIDKSGKTALHFAASIGNEHCVAQLLEHKADPNIRDFSGSVPLWEAMMGRHEKVMKLLLDNGGNISSSDVGHLACIAVEKNNIELLKYLVQCGGDVTQPTSNGNTALHVAVCEENMDILNFLLDQGADIDKEDGNGWTPRALADHQCHEEIQNIFQNIGKNKRPHVIPSIPKIGRSFVAKSQSEPFMPGISQGSILPNQELSDNRQRRKVNPFRNSFFWMMSAANHDKNDSSTSVTNHATPTNVSELSARVTLSCPEKGENAKKLVFLPKSFQELLHIGAKKFDFSPTKLLTKEGAQVEDINVIRDGDYLILARDRSG* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2831 872 Gene3D Jelly Rolls 349 514 IPR014710 -
Lja5g2831 872 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 5 867 - -
Lja5g2831 872 ProSiteProfiles Ankyrin repeat profile. 559 591 IPR002110 GO:0005515
Lja5g2831 872 ProSiteProfiles Ankyrin repeat profile. 656 688 IPR002110 GO:0005515
Lja5g2831 872 ProSiteProfiles KHA domain profile. 804 872 IPR021789 -
Lja5g2831 872 SMART ANK_2a 526 555 IPR002110 GO:0005515
Lja5g2831 872 SMART ANK_2a 656 685 IPR002110 GO:0005515
Lja5g2831 872 SMART ANK_2a 623 652 IPR002110 GO:0005515
Lja5g2831 872 SMART ANK_2a 559 588 IPR002110 GO:0005515
Lja5g2831 872 SMART ANK_2a 592 621 IPR002110 GO:0005515
Lja5g2831 872 Gene3D - 528 711 IPR036770 -
Lja5g2831 872 ProSiteProfiles Ankyrin repeat region circular profile. 559 590 - -
Lja5g2831 872 Gene3D - 66 302 - -
Lja5g2831 872 SUPERFAMILY Voltage-gated potassium channels 58 302 - -
Lja5g2831 872 CDD CAP_ED 381 485 IPR000595 -
Lja5g2831 872 SMART cnmp_10 381 497 IPR000595 -
Lja5g2831 872 MobiDBLite consensus disorder prediction 1 25 - -
Lja5g2831 872 SUPERFAMILY cAMP-binding domain-like 306 500 IPR018490 -
Lja5g2831 872 ProSiteProfiles Ankyrin repeat profile. 592 624 IPR002110 GO:0005515
Lja5g2831 872 ProSiteProfiles Ankyrin repeat region circular profile. 656 687 - -
Lja5g2831 872 PANTHER POTASSIUM CHANNEL AKT1 5 867 IPR045319 GO:0005249|GO:0006813
Lja5g2831 872 SUPERFAMILY Ankyrin repeat 531 713 IPR036770 -
Lja5g2831 872 Pfam Cyclic nucleotide-binding domain 401 484 IPR000595 -
Lja5g2831 872 ProSiteProfiles Ankyrin repeat region circular profile. 592 623 - -
Lja5g2831 872 ProSiteProfiles cAMP/cGMP binding motif profile. 381 499 IPR000595 -
Lja5g2831 872 Pfam Ion transport protein 64 308 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja5g2831 872 Pfam Ankyrin repeats (3 copies) 538 622 IPR002110 GO:0005515
Lja5g2831 872 Pfam Ankyrin repeats (3 copies) 630 687 IPR002110 GO:0005515
Lja5g2831 872 Pfam KHA, dimerisation domain of potassium ion channel 804 866 IPR021789 -
Lja5g2831 872 PRINTS EAG/ELK/ERG potassium channel family signature 249 266 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja5g2831 872 PRINTS EAG/ELK/ERG potassium channel family signature 293 302 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja5g2831 872 PRINTS EAG/ELK/ERG potassium channel family signature 110 119 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja5g2831 872 PRINTS EAG/ELK/ERG potassium channel family signature 76 83 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja5g2831 872 PRINTS EAG/ELK/ERG potassium channel family signature 99 109 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja5g2831 872 PRINTS Ankyrin repeat signature 672 686 IPR002110 GO:0005515
Lja5g2831 872 PRINTS Ankyrin repeat signature 560 575 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2831 Lja-Chr5 55782927 55790049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2831 29 869 Ion Channels AT2G25600 57.294 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2831 K21867 - gmx:100808832 1212.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2831 5 55782927 55790049 Lja5g2831 5 55782927 55790049 ECH
Lja5g2831 5 55782927 55790049 Lja1g3850 1 48637528 48645124 PCT