Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2827 ATGTCTGGTGCTGCAACAATGGCGACGCGCTCGTACGTATGGAGCACCGCACTCGTCAAGATCTCCCCATACACCTTCTCCGCCATCGGAATCGCCGTCGCTATCGGCGTCTCCGTCCTCGGCGCTGCCTGGGGAATTTACATCACTGGTAGTAGCTTGATCGGTGCTGCAATCAAAGCTCCACGAATCACTTCCAAAAATCTCATTAGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGTGTTATCGTGGCTATTATTCTACAAACAAAATTAGAAAGCGTTCCAAAATCACAAATCTATGATCCGGAGTCTCTTAGAGCTGGATATGCCATCTTTGCCTCTGGAATTATAGTGGGCTTCGCAAATCTTGTTTGTGGGTTGTGCGTAGGAATAATTGGAAGCAGCTGTGCATTATCTGATGCTCAGAACTCATCTCTCTTTGTGAAGATTCTTGTGATTGAGATCTTTGGTAGTGCGCTTGGTCTATTTGGAGTTATTGTTGGAATTATTATGTCAGCTCAAGCAACATGGCCCTCAAAATTTTAG 549 0.4499 MSGAATMATRSYVWSTALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPKSQIYDPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPSKF* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2827 182 Gene3D - 24 178 IPR035921 -
Lja5g2827 182 Pfam ATP synthase subunit C 29 88 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lja5g2827 182 Pfam ATP synthase subunit C 113 172 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lja5g2827 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 42 66 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lja5g2827 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 68 92 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lja5g2827 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 124 150 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lja5g2827 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 151 174 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lja5g2827 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 108 172 - -
Lja5g2827 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 8 180 - -
Lja5g2827 182 SUPERFAMILY F1F0 ATP synthase subunit C 105 173 IPR035921 -
Lja5g2827 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 8 180 - -
Lja5g2827 182 SUPERFAMILY F1F0 ATP synthase subunit C 22 91 IPR035921 -
Lja5g2827 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 26 88 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2827 1 181 Primary Pumps ATPases(2) AT2G25610 88.950 4.38e-109 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2827 K03661 - tcc:18588964 311.997