Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2820 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCTATGATTACCTAGTGAAGAGGGATTTGAAGGCTTCGGCTCAAGCTTTTCAAGCTGAAGGGAAAGTGTCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGATTTCTGTTTGAGTGGTGGTCAGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCATTCAGAGGTTGCTGCATCTTACATTGAGACACAACTAGTTAAGGCTAGGGAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACCACAACCTCAGCAGTCACAACATCAGCAACAACAACATCAGCAACAACAACAGCAACAACAGCACATGCAGATGCAGCAGATGATGTTACAAAGGCATGCTCAGCAGCAACAGCCGCAACATCAACAGCCACCACCTCAACAACAGGGTAGGGATAGGTCTCATCTCTTAAATGGTGGTACTAATGGGTTAGTTGGAAACGCTAGCACTGCAAGTGCATTAGCAACAAAGATGTATGAGGAAAGGTTAAAACTGCCCCTTCAAAGGGATTCTTTGGAAGATGCAGCAATGAAGAGATTTGGAGACCAACTCTTGGACCCAAATCATGCCACAATATTGAAGACATCTGGAGCTACTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCTGGGTCTACTCTGGATATAAAAAGTGAGATTAATCCTGTTTTAAATCCCAGAGCAGCGGGTCCTGAAGGATCATTGATAGCAATTCCTGGATCTAACCAAGGTAGCAACAATTTGACTTTGAAAGGGTGGCCACTCACAGGGTTGGAACAACTACGTTCTGGTATGCTTCAGCAACAAAAACCTTTTATACAGTCTCCTCAACCTTTTCATCAACTTCCGATGTTGACGCCACAACATCAACAACAGCTTATACTAGCACAACAAAATTTAGCATCACCATCTGCCAATGATGACAATAGAAGACTCCGAATGCTACTAAATAATAGGAATATGGGTGTAAGTAAGGATGGTCTTTCAAATCCTGTGGGTGATGTAGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCTCCTTTTCCTCGTGGCGATACAGATATGTTAATGAAGTTGAAACTGGCTCAGTTTCACCAACATCAGCAGCAGAACGCCAATTCACAGCAGCAGCAACTTCAACAGCATGCTCTTTCAAATCCGCAATCTCAGACTTCAAATCTTAACATGCATCAGCAGGATAAAGTAGCGGGAGGCAATGTCAATGTCGATGGTAGCATGTCAAACACCTTTAGAGGAAATGATCAGGTTACCAAAAACCAGACTGGTAGAAAGAGAAAACAGCCCGTATCTTCCTCTGGTCCTGCCAATAGCTCAGGAACAGCAAATACGGCAGGCCCATCTCCAAGTTCAGCACCCTCAACGCCCTCAACGCATACAGCTGGTGATGTGATGTCAATGCCTGCTCTACCTCATAATGGTAGCTCATCAAAGCCATTAATGATGTTTGGCACTGATGGCACCGGAACTCTTACCTCACCTTCCAATCAATTGGCTGATGTGGACCGTTTTGTTGAGGATGGATCTCTTGATGACAATGTGGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATAATGTTGGTCGTTGTATGGATGTAAGCAAAGGATTCTCATTTTCGGAAGTAAATTCTGTACGCGCAAGTACAAACAAAGTTGTCTGTTGCCATTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGTCATGATAAAAAGGCTGTTTTATGGTACACAGATTCTCTGAAGCAGAAGGCTACTCTTGAAGAGCATTCATCTTTAATCACCGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTCGCAACATCTTCATATGACAAAACTGTTAGGGTTTGGGATGTTGACAATCCTGGCTATTCGCTTCGTACCTTTACAGGACATTCTGCATCTGTTATGTCACTAGATTTTCACCCTAATAAGGACGACCTTATCTGCTCTTGTGATTTTGATGGCGAGATACGATATTGGAGCATTAATAATGGCAGTTGTGCTAGAGTGTCCAAGGGTGGTACTGCACAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCTGCAGAGAACGTTGTTTCTATATTTGATGTGGAGACACAAGCATGCCGATATTCACTAAAGGGTCATACAAACTCTATACATTCTGTGTGTTGGGATCCTTCTGGGGAGTTTCTGGCATCTGTCAGTGAAGACTCTGTCAGGGTCTGGACTCTTGGAACAGGGGGTGAAGGGGAATGCGTTCATGAGCTTAGCTGTAATGGCAATAAATTTCAGTCATGTGTTTTCCACCCAACGTATCCTTCAATGCTGGTCATTGGTTGTTACCAGTCATTGGAACTCTGGGACATGACCGAGAACAAGACAATGACTCTGTCTGCTCATGAAGGTCTAATTGCTGCATTGGCAGTTTCAACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTCAAGCTCTGGAAGTAA 2652 0.4404 MSQTNWEADKMLDVYIYDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLVKAREQQQQQQQQQQQQQQQQQQQQPQPQQSQHQQQQHQQQQQQQQHMQMQQMMLQRHAQQQQPQHQQPPPQQQGRDRSHLLNGGTNGLVGNASTASALATKMYEERLKLPLQRDSLEDAAMKRFGDQLLDPNHATILKTSGATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTLDIKSEINPVLNPRAAGPEGSLIAIPGSNQGSNNLTLKGWPLTGLEQLRSGMLQQQKPFIQSPQPFHQLPMLTPQHQQQLILAQQNLASPSANDDNRRLRMLLNNRNMGVSKDGLSNPVGDVVSNVGSPLQAGGPPFPRGDTDMLMKLKLAQFHQHQQQNANSQQQQLQQHALSNPQSQTSNLNMHQQDKVAGGNVNVDGSMSNTFRGNDQVTKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTAGDVMSMPALPHNGSSSKPLMMFGTDGTGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDTDPRDNVGRCMDVSKGFSFSEVNSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDFDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSIFDVETQACRYSLKGHTNSIHSVCWDPSGEFLASVSEDSVRVWTLGTGGEGECVHELSCNGNKFQSCVFHPTYPSMLVIGCYQSLELWDMTENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2820 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 851 883 - -
Lja5g2820 883 MobiDBLite consensus disorder prediction 454 514 - -
Lja5g2820 883 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 883 - -
Lja5g2820 883 MobiDBLite consensus disorder prediction 221 254 - -
Lja5g2820 883 MobiDBLite consensus disorder prediction 410 448 - -
Lja5g2820 883 ProSitePatterns Trp-Asp (WD) repeats signature. 660 674 IPR019775 -
Lja5g2820 883 MobiDBLite consensus disorder prediction 410 547 - -
Lja5g2820 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 766 798 IPR001680 GO:0005515
Lja5g2820 883 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 883 IPR044716 GO:0003714
Lja5g2820 883 Coils Coil 83 108 - -
Lja5g2820 883 SUPERFAMILY WD40 repeat-like 593 883 IPR036322 GO:0005515
Lja5g2820 883 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lja5g2820 883 MobiDBLite consensus disorder prediction 522 547 - -
Lja5g2820 883 MobiDBLite consensus disorder prediction 105 175 - -
Lja5g2820 883 SMART WD40_4 634 673 IPR001680 GO:0005515
Lja5g2820 883 SMART WD40_4 844 883 IPR001680 GO:0005515
Lja5g2820 883 SMART WD40_4 592 631 IPR001680 GO:0005515
Lja5g2820 883 SMART WD40_4 803 842 IPR001680 GO:0005515
Lja5g2820 883 SMART WD40_4 677 717 IPR001680 GO:0005515
Lja5g2820 883 SMART WD40_4 759 797 IPR001680 GO:0005515
Lja5g2820 883 SMART WD40_4 720 756 IPR001680 GO:0005515
Lja5g2820 883 Pfam WD domain, G-beta repeat 599 630 IPR001680 GO:0005515
Lja5g2820 883 Pfam WD domain, G-beta repeat 680 717 IPR001680 GO:0005515
Lja5g2820 883 Pfam WD domain, G-beta repeat 638 673 IPR001680 GO:0005515
Lja5g2820 883 Pfam WD domain, G-beta repeat 762 796 IPR001680 GO:0005515
Lja5g2820 883 Pfam WD domain, G-beta repeat 846 883 IPR001680 GO:0005515
Lja5g2820 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 684 722 - -
Lja5g2820 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 640 IPR001680 GO:0005515
Lja5g2820 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 641 676 IPR001680 GO:0005515
Lja5g2820 883 CDD WD40 595 883 - -
Lja5g2820 883 Gene3D - 574 734 IPR015943 GO:0005515
Lja5g2820 883 Pfam LisH 10 36 IPR006594 GO:0005515
Lja5g2820 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 851 883 IPR001680 GO:0005515
Lja5g2820 883 Gene3D - 735 883 IPR015943 GO:0005515
Lja5g2820 883 SMART Lish 8 40 IPR006594 GO:0005515
Lja5g2820 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 641 676 - -
Lja5g2820 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 684 726 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2820 Lja-Chr5 55539900 55560287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2820 678 882 Miscellaneous Gene Families AT5G08390 27.143 1.65e-15 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lja5g2820 WD40 0.079 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2820 - - gmx:100779972 1276.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2820 5 55539900 55560287 Lja1g3839 1 48471397 48480747 PCT