Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2816 ATGTATTGTTACAAGGAAGCCGGAGCAAAAGTTGATGAAGGACGACCAGTCACTGAAAATCTCCAGTTAGGAGGAAAAAGCAACAAAAATAAAGTCACTCAAGGAAGCACCTCACCTTCTAAAGAGGTTGATGTTGCTGTTGTTGCTCATGATTCTGGGTCAAAAAGGAAGAGCTTAGATTATTACAACAAAGCACTTTTGAGATTGATTCACCCGCTGCCAAAAGTAGAAGTCCAAGTTGAGAGCATAGTGGACGTACCGGATGATGGTTATCGATGGCGTAAGTCTGGACAGAGGCCTAGTAAGGGAAATCTAATGCCTAGGAGATACTTCATGTGCACCACTGCTGGATGTCCTGTTAGGAAAACAGTTGAAAGGAATCTACACAATTTGAAAAATGTGATTACTACTTATAAAGGAAGACATAATCATGAGGTGCCCTTGGAAAAACACAAAGACTGCTCAATTAATGTTGATGATTTTCACAAAGCTGCTAATTCTCTAAGGACTGTTGCAATGTCTGGGAATGCCAATATTCGAGGGCCTGAAGCAAATCAGGAAGACGAAAATGATTTTCTGAGGCTCACTTTGGGTCAAAATTTCAATAATGATCATGTGAATGTTAGATCTTCCTCCACAAACCATATTCCAGGGCCTGAAGCAAATCAAGAAGACGACAATGATTTTTTGAGGCTCACTTTAGGTCAAAATTTCAATATTGATCATGTGAATGTTAGATCTTCCTCGACAAACCAAATCCCATCTATCAACTTGGAGAAAGATGGCGATGATATATAA 798 0.396 MYCYKEAGAKVDEGRPVTENLQLGGKSNKNKVTQGSTSPSKEVDVAVVAHDSGSKRKSLDYYNKALLRLIHPLPKVEVQVESIVDVPDDGYRWRKSGQRPSKGNLMPRRYFMCTTAGCPVRKTVERNLHNLKNVITTYKGRHNHEVPLEKHKDCSINVDDFHKAANSLRTVAMSGNANIRGPEANQEDENDFLRLTLGQNFNNDHVNVRSSSTNHIPGPEANQEDDNDFLRLTLGQNFNIDHVNVRSSSTNQIPSINLEKDGDDI* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2816 265 MobiDBLite consensus disorder prediction 21 39 - -
Lja5g2816 265 SUPERFAMILY WRKY DNA-binding domain 84 147 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja5g2816 265 ProSiteProfiles WRKY domain profile. 82 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g2816 265 Pfam WRKY DNA -binding domain 88 145 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g2816 265 MobiDBLite consensus disorder prediction 19 39 - -
Lja5g2816 265 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 208 IPR044810 GO:0003700
Lja5g2816 265 SMART WRKY_cls 87 146 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g2816 265 Gene3D WRKY domain 73 148 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja5g2816 265 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 29 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2816 Lja-Chr5 55510089 55512012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2816 74 178 WRKY Transcription Factor Family AT2G38470 47.619 1.01e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja5g2816 WRKY 6.8e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2816 K18835 - lja:Lj5g3v0550200.2 545.428