Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2814 ATGGAACGACCTGGGGTTTTCAACAACAGTCAGCAGCATGTTATAGAAATAGCAGGGAGTGCTGAAGCTTCCACGTCCGCCGCGTCGCCTCGCGATAGACATTTTAACGGCGGTGCGGATGGATTGCGAAGTGAGGAAAGGATTAGCGGCTCGCGGGTGCCGGTTACTCAGCCTTCGGTGTCGGTGTCGACAACGTCCGGTGGAATGACGACGAATAGCAGGAGTTCTTCGCTTGTGAGGCGTGGGGACTCTAGACGGAATAGGAGTCCTGTGCATTCGGGGATATGGATATCGGTTGAGCTAGTGCTGTTAATGAGCCAGATTGTTGCGTCGATTGTTATTTTGTCGATGTCGCGGCATGAGCACCCGCGTACCCCGTTGTTTCAGTGGATTGTTGGTTATGCCTGTGGATGTGCTGCTACGCTTCCTCTTCTATATTGGCGTTATTATCATCATAACCATATGCGAGAGCAAGAATCGCGCCAAACATCTCCTCGGGTTAACGATCCTTCAGGGACACTTCTTTCCAGTTCCAGAATAAATGGAGGAGAGGATGCTCAAGCTGCTTCCTCCAGAAGCAATCAACCTTCAATATTGGTGAATAGAAGAATGAAGACACTCGTGGAATACTTCAAAATATCCTTAGATTGCTTTTTTGCCGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCATCTGCAGATGAAGCTCCTAACTTGTACAGGTTATGCATAGTGTTTCTTGCATTTAGCTGTATTGGTTATGCAATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCTTGTATAATTTCCATCCTTGGGGTTAGGGAAGATCTGGCACAAAACCGAGGGGCAACTTCTGAGTCCATTAACGCTCTTCCGACTTACAAGTTCAAAATGAAAAAAAATAAAAGAAATAGTGAAAGCAACTCAGCTGCTGCGGAAAGTGGAGTTGTGGCTGCAGGAACTGAAAAAGAGCGGGTGATCTCTGGAGAAGATGCAGTTTGTTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGACTGCGTTGACAAGTGGTTAAAGATAAATGCATTATGCCCTCTTTGCAAGAGCGAGGTTGGTGAAAACATAACAGGATTGGTCTCTGGTGAAGATGCCAGCCAACAACGGGGTGAGAGCAGGGTTGAGAACGGCCTCGCCAATACCTCAGTTTAA 1254 0.4665 MERPGVFNNSQQHVIEIAGSAEASTSAASPRDRHFNGGADGLRSEERISGSRVPVTQPSVSVSTTSGGMTTNSRSSSLVRRGDSRRNRSPVHSGIWISVELVLLMSQIVASIVILSMSRHEHPRTPLFQWIVGYACGCAATLPLLYWRYYHHNHMREQESRQTSPRVNDPSGTLLSSSRINGGEDAQAASSRSNQPSILVNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDLAQNRGATSESINALPTYKFKMKKNKRNSESNSAAAESGVVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGENITGLVSGEDASQQRGESRVENGLANTSV* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2814 417 MobiDBLite consensus disorder prediction 19 90 - -
Lja5g2814 417 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 409 - -
Lja5g2814 417 MobiDBLite consensus disorder prediction 50 78 - -
Lja5g2814 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 394 IPR013083 -
Lja5g2814 417 MobiDBLite consensus disorder prediction 397 417 - -
Lja5g2814 417 CDD RING-H2_RNF111_like 341 383 - -
Lja5g2814 417 ProSiteProfiles Zinc finger RING-type profile. 342 383 IPR001841 -
Lja5g2814 417 Pfam Ring finger domain 342 383 IPR001841 -
Lja5g2814 417 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 409 - -
Lja5g2814 417 SMART ring_2 342 382 IPR001841 -
Lja5g2814 417 SUPERFAMILY RING/U-box 333 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2814 Lja-Chr5 55494793 55499906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2814 80 389 C3H Transcription Factor Family AT1G80400 57.367 4.93e-138 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2814 - - gmx:100778728 652.899