Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2810 ATGGGACATCATAAGAAAGAAGATGAAAAGACTGAAAAAGTAATTCGAGGACTTCTAAAACTTCCCGAAAATCGAAGATGCATCAACTGTAACATCCTGGGACCGCAATATGTCTGTACCACATTCTCGACATTTGTTTGCACAAATTGCAGTGGGATACATCGAGAGTTTACCCATAGAGTCAAATCTATTTCAATGGCTAAATTTACTCCGGAAGAAGTTACAGCTCTTCAAGCAGGTGGTAATGAGAGAGCAAAGCATATTTACTTAAAAGAGTGGGATTCTTTACGCCATTCTTACCCTGATTCGTGTAATATACACAAACTTCGAGATTTTATCAAGCATGTCTATGTGGACAGAAAATTTACCGGTGAAAGGAATTATTGCACTCTTCCTAGAGTTAGATTGAATGACAAGGAGGATTCATATGAAAGTAGAAAGAAAAGTTTATTTCGTTTAGATTTCAAAAGTTCGCATTCAAGTCCTGGTGCAAGAAGTGATGACTTGAGTTTCAGATATTTATATGATGAAAGCAAGAGTCCTAAATATGCACAAAAGTATTCAAGGCGTGGAGGTTTAAGCAAAAGTCCTATAAAATTTGAGGTTGTTGATGATAGGCTCAAAGATGATGAATTCAGAAATCGTAGGCTATCAAATCTACAATCAAAGCTAAGAGCCCTTTCACTTGATAGTCAGAAGAATGTTGAAAGATCCCAACCACGCCCTGTGAGTAATATAATGGGAGAAAATTCTCCTTCTCCACAAGTAGCTTCTGAAGATGCTACTGGAGTTGAAACTGAAACACCACGTATGTCACAGGAAAGTGGGAATAATTGGGCCTCATTTGAAGCTTCTAAAGAGGACAATGCTCCTAAAACTCCAAACACCAACACTACCCTGAAATCACCTACAATAGAAGCAAGACCTGAACCAAAATTCACAAATCCTTTAGACCTATTACTTTTTGAATTAACACCAACCACTACCACGGAGATAGAACAATCATCTAATGCAACCCCAACACAAGCTGAGACACATGATGCACAAGACTCCATTGAAGAAGTTTCACATGCTCATACACCATCAAGTATGCAATATCTTCCTTCTGCATCAGTAGATTCTAGCCTTATGACACAACCTACAAGTGCACCAGCCGAAGTTGTTGTAGATAAACATAATCTGTCACCAATTGTTCCGACTAAAGATGACACTTTGTGTGATTCTATTGAACAATCTTTTCAAACAACCCCAGAATGTACTCATGACACCAAAGTCAATATTGTTGGCTCCCAGCCCAGCATAGTGGAAACAAGATCTATTGAAAGAAGGGAACTTCCAGAGGATCTTTTTACTGCAAGCTACTTATCTGGACCTGCACCACTTGCAGGTTGGCATAATGTTCAACCTCAAGGCATGGGCATGAGATATGGCATGCAGTTTTATCCTAGTGCAATGCCTCCTTCAACACTTCCATTTGCACCAAAGTCTACAAACCCGTTTGAAGCATCCGAGGGGAGAGGTCTAATCCATGCTGCATCATTTCCTACTATGGCTTCTTTGAATGGTGCAATGCCAACTGCATCACCCGAAACTGGCCTAATGCATGTTTCTAGCCTTGGGTCTTTAAATACAATGGTGCCTTTGTCCACAAGTTATGCAACACCCATTCCTCCACAGTCTCCCTTTGCATCTGGAGCTCCTACTGGTGTGTATTTTGATCAAGATAATGGGGAGCAACCTAGAAGGTCACAAAGAATTGATAGCTTCAATCGTGACATAACTGGTTTTGGATCTCTAGATCCCATTCAACAATCATCTGGGGAATATGTGACATCAAGAACTCCAAATTCTTTTTCCAATACAAAGCGAAACCCATTTGAATAG 1884 0.3992 MGHHKKEDEKTEKVIRGLLKLPENRRCINCNILGPQYVCTTFSTFVCTNCSGIHREFTHRVKSISMAKFTPEEVTALQAGGNERAKHIYLKEWDSLRHSYPDSCNIHKLRDFIKHVYVDRKFTGERNYCTLPRVRLNDKEDSYESRKKSLFRLDFKSSHSSPGARSDDLSFRYLYDESKSPKYAQKYSRRGGLSKSPIKFEVVDDRLKDDEFRNRRLSNLQSKLRALSLDSQKNVERSQPRPVSNIMGENSPSPQVASEDATGVETETPRMSQESGNNWASFEASKEDNAPKTPNTNTTLKSPTIEARPEPKFTNPLDLLLFELTPTTTTEIEQSSNATPTQAETHDAQDSIEEVSHAHTPSSMQYLPSASVDSSLMTQPTSAPAEVVVDKHNLSPIVPTKDDTLCDSIEQSFQTTPECTHDTKVNIVGSQPSIVETRSIERRELPEDLFTASYLSGPAPLAGWHNVQPQGMGMRYGMQFYPSAMPPSTLPFAPKSTNPFEASEGRGLIHAASFPTMASLNGAMPTASPETGLMHVSSLGSLNTMVPLSTSYATPIPPQSPFASGAPTGVYFDQDNGEQPRRSQRIDSFNRDITGFGSLDPIQQSSGEYVTSRTPNSFSNTKRNPFE* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2810 627 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Lja5g2810 627 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 387 - -
Lja5g2810 627 CDD ArfGap_AGFG 12 122 - -
Lja5g2810 627 MobiDBLite consensus disorder prediction 228 312 - -
Lja5g2810 627 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 368 627 - -
Lja5g2810 627 MobiDBLite consensus disorder prediction 330 346 - -
Lja5g2810 627 MobiDBLite consensus disorder prediction 228 304 - -
Lja5g2810 627 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Lja5g2810 627 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 123 IPR001164 GO:0005096
Lja5g2810 627 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Lja5g2810 627 PANTHER ARFGAP/RECO-RELATED 368 627 IPR044820 GO:0005096
Lja5g2810 627 MobiDBLite consensus disorder prediction 557 627 - -
Lja5g2810 627 PANTHER ARFGAP/RECO-RELATED 1 387 IPR044820 GO:0005096
Lja5g2810 627 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Lja5g2810 627 MobiDBLite consensus disorder prediction 330 367 - -
Lja5g2810 627 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Lja5g2810 627 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Lja5g2810 627 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Lja5g2810 627 MobiDBLite consensus disorder prediction 597 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2810 Lja-Chr5 55401841 55407987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2810 15 104 C2H2 Transcription Factor Family AT4G05330 34.043 1.41e-11 64.3