Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2809 ATGGGCGAGGTGGCAGTGATATCCTTTGAACCTCTGCAGTTCGAAAGCAATGATGTGAAACACATGACTGAGAAAAACATTTTTACTGGAGAAGAATCAAGTGAATCAAAAGATCATGAAAAGACCAATGACTTGCAAGACAAAGGATATATGGAGCATGGATGCACACATTACCGAAGAAGATGTCGTATCAGGGCCCCCTGTTGCAGTGAGATTTTTGGTTGCCGCCATTGTCACAATGACGCAAAAAAAAGATTTAAAAATATTCTCGTTTGGGTCCCTTTCACTTTAGTGGCTACGTGGATAGAAGACAGGGAAACATTTGTCACAATCAAAGTGAAAGTAAGTAATTTACACAACACGACAAACAAAGTAGTAACGCGCGGAGAGAGAAAGAGAAAGATAGTACAGATACACGGTACTGCCTGCACAAGTTTCAGTTTCTCACACACACACATACACCATTCAGAGAGAGAAAGAAAAAGAAAAAGAGTTTTGGAGTTTCTTCTCTCTCTGAAACTCAACTGA 528 0.4015 MGEVAVISFEPLQFESNDVKHMTEKNIFTGEESSESKDHEKTNDLQDKGYMEHGCTHYRRRCRIRAPCCSEIFGCRHCHNDAKKRFKNILVWVPFTLVATWIEDRETFVTIKVKVSNLHNTTNKVVTRGERKRKIVQIHGTACTSFSFSHTHIHHSERERKRKRVLEFLLSLKLN* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2809 175 Pfam CHY zinc finger 55 84 IPR008913 GO:0008270
Lja5g2809 175 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 21 87 - -
Lja5g2809 175 ProSiteProfiles Zinc finger CHY-type profile. 48 120 IPR008913 GO:0008270
Lja5g2809 175 SUPERFAMILY CHY zinc finger-like 52 85 IPR037274 GO:0008270
Lja5g2809 175 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2809 Lja-Chr5 55390631 55393172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2809 53 80 C2H2 Transcription Factor Family AT3G18290 53.571 3.06e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2809 K10144 - gmx:100803569 130.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2809 5 55390631 55393172 Lja1g3820 1 48227096 48233607 PCT