Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2807 ATGGACGACGAAGCCAATCAAAATGCTCCGCCGCTGGAATTTCAGTTACACGACGGCGACGGTGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGAATATGAACTAGATGAAGAAGAAGATGATGATGTTGATATTGATGTTGATGATGAGGATGACGAGGAGGAGGAAGAAGAAGAGGAGGAAGTGGAGGAGGGCGACGAGTCGAAGAAGGAAGAAGAGGAGATAATTGCCAAGGCGAACAAGCTCATGGAGATTATCACATGTGCTCCTGATAACCCTAAACCCAAGGTCCTTCATGCTCTTGCCTCCATTCTCGAAACACAAGAGTCACGATACATGGAAGAGAACGACCATTCTTCGTCCAGTAATGCTCGCGCTGCTCATACCATCGGGCGACTGGGGAGCTTAATTCGGGAGAATGATGAGTTCTTTGAGTTGATATCTTCCAAGTTTCAGTCAGAAACAAGATACACCACTTCCATTCGGGCTGCTGCTGCCAGGCTTCTCCTGAGCTGTTCAATAACATGGATTTATCCCTATGTTTTTGACGAATCTGTCGTGGAGAATATCAAACACTGGGTAATGGATGAGAGTACTAGTCTGTCCGCTGAGGAGCAAAATCTGATGTGTAATCCAGGAAGAAAGGAAGTCTCAGATACTGAAATGTTGAAAACCTATTCTACCGGCCTTCTTGCTGTGTGTTTAGCTGGGGATGAGGTTAGTGGAGGTCAAGTGGTTGAAGATGTCTTGACGTCTGGCTTGTCAGCGAAGCTTATGCATTATCTTCGGTTGCGTGTATTGGGGGAGACAAGTACCTGCTGTAAAGACACTAATCTTTTAACAGAGAGTAGGCACACATCTGGGAGTACTTCAATGAGAGGTAGAGATGATGGTCGCAGTAGATTTCGCCTGGTTCTGGAATCAAGTCATTATGATGATACAAGCATGAATGATGAGAGATCATTGGATGATAGAATTCTTGAAAGGAGTGATCATGATAAAATCATCAGTGGAAAAACTTGCCAGGAAGATTCTTGGCGAGATGGTGAACCCCCTGATCAGCTGAGGGAAAGAGCTGATATCTGTGTCATAGACACTGCTGGAGAGGATCAATGGAACTGTAGAGATATACGTGATGGAAGGATAAAATATGGTGACCATGAAGATAATGTTAGCGATGACTCTTCAAGACTGCAAGTGAACTGTGGATGGGGAAGATCCAGAGGGAAGGGAAGGGTCAATGAAGAGAATATAGGAAGTGAACCAACTTTGTCATATCTTGGTTCTTGTAGTCGATTAGTACAGGGAAAGTGTGTTAAAGATGGGAGCATCTTGAAGAATGCTGATACCAGAATGGTGTCTGATTCGGAGAAGATTGTTGCGACAAGCACGTCTGAGGCATATGTTTTCGACAGAGACGATAACGATGATTGTTTCAAAGAGTGCTATATTGGTGGTAAAGATATCTCTGCTCTTGTTAGGAAAGCAGTCCAAGCTGCTGAAGCTGAAGCTAGATCTGCTAAAGCACCTGAAGAAGCTGTCAGGGCAGCTGGTGATGCTGCTGCTGAACTCGTTAAAACTGCGGCTTCAGAGGAATTCAAATCCACCAATAATGAAGAAGCAGCTGTTTTAGCTGCTTCAAAAGCTGCATGGACTGTTACTGATGCTGCATCATCAGTTGAAGTTTCAAGGAGCTCCATCATCATTAACAAGGAGACTGAGAATGCAGGGGTTCAAGACACAGAATCTTGTGAAGATGTTGAGGATTACTGCATCCCAGATACTCAATCACTTTTGCAGTTGAGGGAAAAATATTGCATTCAGTGTCTTGAGCTACTCGGAGAATATGTGGAAGTTCTTGGCCCTGTATTGCATGAGAAGGGGGTAGATGTGTGTCTTGCACTTCTGCAACAGAATTCTAAACATCAAGAGCCTTCCGAAGTTGCCTTACTGTTGCCTGATGTCATGAAGATGATCTGTGCTTTGGCTGCTCACAGGAAGTTTGCTGCCCTGTTTGTGGATCGTGGGGGCATGGGAAAGCTTCTTGGTGTTCCTAGAATGGCTCAAACTTTCTTTGGCCTTTCTTCTTGTCTGTTTGCTATCGGTTCTGTGCAGGGGATAATGGAAAGGGTTTGTGCTCTTTCATCTGATGTTATTTATCGTTTGGTTGAGTTGGCTCTCCAGCTACTTGAATGCAACCAAGAACAAGCTCGGAAGAATGCAGCATTATTTTTCGCTGCTGCATTTGTCTTTAGAGCAGTTCTTGACGCTTTTGATGCTCAGGATGGATTACAGAAATTACTGGGCCTTCTGAACGATGCTGCTATGCTAAGATCGGGAGTAAACTCTGGAGCTTTGGGCTTATCCAACTCAGGGTCACTTAGAAATGATAGATCGTCTGAAGTGCTGACATCATTTGAGAAGCAGATAGCCTACCATACTTGTGTTGCTTTACGGCAATACTTCAGAGCTCATCTCCTTTTATTAGTGGATTCCATTCGTCCAAACAAAAGCAATCGCAGTGCTTCTAGGAATATTCCGAGTGTAAGGGCAGCACACAGGCCGCTTGACATTAGCGATGAGGCAATGGATGCTGTATTCCTACAATTACAAAAAGATCGCAAGTTGGGTTCTTCATTTGTGAGAACACGTTGGCCAGCAGTTGATAAGTTCTTGGCGTGTAATGGACATGTTACAATGCTGGAATTGTGTCAGGGCCCTCCCCCTCCTGTGGAACGGTATCTGCATGATTTGCTTCAGTATGCATTGGATGTTCTTCATATTGTTACATTGGTACCTAGCAGTCGCAAGATGATTGTAACTGCCACATTAAGCAATAATCGTGTTGGTACAGCGGTCATTTTGGATGCTGCAAATATTGTTAGTAATCATGACGACCCGGAGATAATTCGGCCTGCTCTAAATGTATTAGTGAACCTTGTTTGCCCTCCACCTTCAATCAGCAACAAACCAGCTTCAGTTACACCAGGCCAGCAATCTGCTTCTGCCCAAACTTCGAAAGGTCCTATGTCGGAGACTAGAGATAGAACTGCTGAACGAAATGTCTCAGATCGACCTGTTAATTTTTCAAGTCAGACTGATACTAGGGAACAAAATGCAGAATCTAATGCTGTGGATCGAGACGGTGCTGCAGCAGTTAATACACAAACTGTTCTGGCCGCTACTTCAGGATTGGTTGGAGACCATAGAATATCTCTGGGTGCTGGAGCAGGCTGTGCTGGCCTGGCTGCACAACTGGTACAAGGATATCGTCAAGCAAGAGAGGCTGTTCGTGCTAACAATGGAATAAAGGTTCTTTTACATCTCCTCCAGCAACGCATATATTCACCTCCTGCTGCTTTGGACTGTCTTCGTGCTCTAGCATGTCGAGTCCTGCTTGGTTTAGCAAGAGATGATATTATAGCACACATATTGACAAAGCTACAGGTTGGGAAGAAGCTGTCAGAACTAATTAGGGATTCAGGCAGTCAGACACATGGAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAAGCTGCAATCGAGTTAATTGGGGTTGTCACCAACTCAGGGCATGCAAGTACATTGGCTGCTACAGATGCAGCTACTCCTACCTTAAGGCTCATAGAAAGAGAAGCTATAGCTGCTGCCACTCCTATATCATACGATTCGAGGGAACTTTTACAACTTATTCATGAATACGTACGAGCATCTGGATTGTCACAAACTGCTTCTATATTGCTTAAAGAGGCTCAGTTGAAACCTTTGCCATCATTGATTGCTCCATCTTCTCTTGCACAGCCACCCTCAACACAGGAAGCTCCTTCAGTACAGCTTCAATGGCCTTCAGGTCGTGCTCCTGGGTTTCTGTCGGACAAATTAAAGCTTAATGCAGGGGATGATGATGTGTTAGGATCCGATGTCAGCACAAGGATTGGTTCAGCTTTCACTTCAAAGAAAAAATCACTGATTTTCTCTTCTTCCATTGGTTCAAATTCAAGGCATCAACTTGATGATTCTCGGCAGTCATCTGTTAGAAAAGTTTCAAGTACTAGTAAAGGTTCTTCAGAAACTGCAATAGTATCAGAGACTCCGTCAAAACTTTTGGAGAAACATAACATCGATTCTGAATCTCAGTATAAGACTCCAATCATCTTGCCAATGAAACGTAAACTATCTGATTTAAAGGATACAAGAGTGTTGTCATCATCTAGAAAGCGATTAATTGCTGGGGATCATGGAATTCGTTCTCCTATTTGTATAACTCCAAATACGGTTCGTAAAACAAACTTGCAGACAGATGCTATTAGGTTTCCTACACCAAGTTCCAACCTGAGAAATCAGCAAGGACGTTGTTCAGTTGACTATGTGGATGAAAATCAGAACAGTATGTCAAATCTTGGTCAGTTTACACCATCCTCCGCAGCAATAAATGATCTTCAGCACAGCAACTCAGAGCGTATGACATTAGATTCTATAGTTGTTCAATATCTGAAGCATCAGCATCTCCAATGCCCAGCTCCTATTACCACTCTTCCTCCACTATCTCTATTACATCCTCATGTTTGTCCTGAACCCAAGCGAAGCCTTGATGCTGCTTCTAATGTGACAGCTCGTTTTAAGAGACGTGAATTTAAATTCATATATGGTGGGGTGCACGGGAATCGCAAGGATCGTCAATTTGTTTATAGCCGATTCAGACCATGGCGCACTTGTCGTGATGATGCTGGTGCCTTATTGACATGCATTACATTTCTTGGTGACTCTTCTCGTATTGCTGTTGGGAGCCACAATGGAGAGGTCAAACTTTTTGACTCTAACAACAACAATGTGGTGGAGAGCTTCACAGGTCATCAGTATCCATTGACACTTGTTCAGTCTTTTGTTTCTGGTGAAACCCAGCTATTGCTATCTTCAAGCTCTCAAGATGTAAGGTTGTGGGATGCTTCATCACTTTCGAGTGGTACTACCCATTCATTTGATGGGTGCAAGGCTGCCAGGTTTTCCAACTCTGGGAATGTTTTTGCAGCCTTGTCATCAGAATCTGCACAACGGGAAATCCTGTTGTATGATATTCAGACGTGTCAGCTAGAGTCTAAGTTATCGGATACTTCTACAAATTTTACAGGTCGGGGTCATGTTTATCCTTTAATCCATTTTAACCCTTCCGACTCAATGCTGCTTTGGAATGGTGTCTTATGGGACCAGCGTGTTTCTGAGCCTGTTCATCGCTTTGATCAGTTCACTGACTATGGTGGTGGAGGCTTTCATCCTGCTGGCAATGAGGTTATTATAAACTCAGAAGTCTGGGACCTACGCAAGTTCAGTCTGCTTCGTAGTGTACCATCATTAGATCAAACAGAAATAACATTCAATGCGCATGGTGATGTGTTATATGCAATCCTGAGGAGAAAAATCGAGGATGTTATGTCAGCAGTCAACACACGTCGTGTCAAGCATCCTCTTTTTGCAGCTTTCCGCACAGTGGACGCAGTGAATTATTCAGAAATTGCTACTATCCCAGTGGACCGCTGTGTTCTTGATTTCGCAACCGAGCCCACAGATTCAATTGTTGGGTTGGTTACAATGGATGATCAAGATGAAATGTTTGCCTCAGCCAGAATCTATGAAATTGGTCGTAGGAGGCCACCTGATGATGATTCTGATCCTGAGGATGATGAAAGCGATGAAGAAGATGATTCTGATGATTCTGATGTGGATCCTCTTTTAGGCCCTGGATTTGGAGACAGTGAAAGTGATGTTGATGACAGTTCAAGTGAGCTTGATGATGATGATGGTGATGATGGAGATTTCATCATGGACTTCCAAGGAGGAACTGACATATTGGACATGGTATCAGAAGGTGATGAGGATGATGATTATAGATTAGTACTTGAATCTTATAGTAGTGATCAATAA 5925 0.4361 MDDEANQNAPPLEFQLHDGDGEEEEEEEDDDDEYELDEEEDDDVDIDVDDEDDEEEEEEEEEVEEGDESKKEEEEIIAKANKLMEIITCAPDNPKPKVLHALASILETQESRYMEENDHSSSSNARAAHTIGRLGSLIRENDEFFELISSKFQSETRYTTSIRAAAARLLLSCSITWIYPYVFDESVVENIKHWVMDESTSLSAEEQNLMCNPGRKEVSDTEMLKTYSTGLLAVCLAGDEVSGGQVVEDVLTSGLSAKLMHYLRLRVLGETSTCCKDTNLLTESRHTSGSTSMRGRDDGRSRFRLVLESSHYDDTSMNDERSLDDRILERSDHDKIISGKTCQEDSWRDGEPPDQLRERADICVIDTAGEDQWNCRDIRDGRIKYGDHEDNVSDDSSRLQVNCGWGRSRGKGRVNEENIGSEPTLSYLGSCSRLVQGKCVKDGSILKNADTRMVSDSEKIVATSTSEAYVFDRDDNDDCFKECYIGGKDISALVRKAVQAAEAEARSAKAPEEAVRAAGDAAAELVKTAASEEFKSTNNEEAAVLAASKAAWTVTDAASSVEVSRSSIIINKETENAGVQDTESCEDVEDYCIPDTQSLLQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHQEPSEVALLLPDVMKMICALAAHRKFAALFVDRGGMGKLLGVPRMAQTFFGLSSCLFAIGSVQGIMERVCALSSDVIYRLVELALQLLECNQEQARKNAALFFAAAFVFRAVLDAFDAQDGLQKLLGLLNDAAMLRSGVNSGALGLSNSGSLRNDRSSEVLTSFEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSASRNIPSVRAAHRPLDISDEAMDAVFLQLQKDRKLGSSFVRTRWPAVDKFLACNGHVTMLELCQGPPPPVERYLHDLLQYALDVLHIVTLVPSSRKMIVTATLSNNRVGTAVILDAANIVSNHDDPEIIRPALNVLVNLVCPPPSISNKPASVTPGQQSASAQTSKGPMSETRDRTAERNVSDRPVNFSSQTDTREQNAESNAVDRDGAAAVNTQTVLAATSGLVGDHRISLGAGAGCAGLAAQLVQGYRQAREAVRANNGIKVLLHLLQQRIYSPPAALDCLRALACRVLLGLARDDIIAHILTKLQVGKKLSELIRDSGSQTHGTEQGRWQAELSQAAIELIGVVTNSGHASTLAATDAATPTLRLIEREAIAAATPISYDSRELLQLIHEYVRASGLSQTASILLKEAQLKPLPSLIAPSSLAQPPSTQEAPSVQLQWPSGRAPGFLSDKLKLNAGDDDVLGSDVSTRIGSAFTSKKKSLIFSSSIGSNSRHQLDDSRQSSVRKVSSTSKGSSETAIVSETPSKLLEKHNIDSESQYKTPIILPMKRKLSDLKDTRVLSSSRKRLIAGDHGIRSPICITPNTVRKTNLQTDAIRFPTPSSNLRNQQGRCSVDYVDENQNSMSNLGQFTPSSAAINDLQHSNSERMTLDSIVVQYLKHQHLQCPAPITTLPPLSLLHPHVCPEPKRSLDAASNVTARFKRREFKFIYGGVHGNRKDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSRIAVGSHNGEVKLFDSNNNNVVESFTGHQYPLTLVQSFVSGETQLLLSSSSQDVRLWDASSLSSGTTHSFDGCKAARFSNSGNVFAALSSESAQREILLYDIQTCQLESKLSDTSTNFTGRGHVYPLIHFNPSDSMLLWNGVLWDQRVSEPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFSLLRSVPSLDQTEITFNAHGDVLYAILRRKIEDVMSAVNTRRVKHPLFAAFRTVDAVNYSEIATIPVDRCVLDFATEPTDSIVGLVTMDDQDEMFASARIYEIGRRRPPDDDSDPEDDESDEEDDSDDSDVDPLLGPGFGDSESDVDDSSSELDDDDGDDGDFIMDFQGGTDILDMVSEGDEDDDYRLVLESYSSDQ* 1975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2807 1974 PANTHER VPRBP PROTEIN-RELATED 373 1325 IPR033270 GO:0016567
Lja5g2807 1974 Coils Coil 56 76 - -
Lja5g2807 1974 MobiDBLite consensus disorder prediction 1264 1284 - -
Lja5g2807 1974 SMART Lish 1225 1257 IPR006594 GO:0005515
Lja5g2807 1974 MobiDBLite consensus disorder prediction 1332 1363 - -
Lja5g2807 1974 MobiDBLite consensus disorder prediction 1877 1962 - -
Lja5g2807 1974 MobiDBLite consensus disorder prediction 1265 1281 - -
Lja5g2807 1974 Gene3D - 1568 1892 IPR015943 GO:0005515
Lja5g2807 1974 SUPERFAMILY WD40 repeat-like 1569 1801 IPR036322 GO:0005515
Lja5g2807 1974 PANTHER BNAA03G51310D PROTEIN 1317 1878 - -
Lja5g2807 1974 PANTHER BNAA03G51310D PROTEIN 373 1325 - -
Lja5g2807 1974 PANTHER BNAA03G51310D PROTEIN 48 316 - -
Lja5g2807 1974 ProSiteProfiles LIS1 homology (LisH) motif profile. 1225 1257 IPR006594 GO:0005515
Lja5g2807 1974 PANTHER VPRBP PROTEIN-RELATED 1317 1878 IPR033270 GO:0016567
Lja5g2807 1974 PANTHER VPRBP PROTEIN-RELATED 48 316 IPR033270 GO:0016567
Lja5g2807 1974 MobiDBLite consensus disorder prediction 18 71 - -
Lja5g2807 1974 MobiDBLite consensus disorder prediction 1 73 - -
Lja5g2807 1974 SUPERFAMILY ARM repeat 24 749 IPR016024 -
Lja5g2807 1974 SMART WD40_4 1610 1650 IPR001680 GO:0005515
Lja5g2807 1974 SMART WD40_4 1655 1693 IPR001680 GO:0005515
Lja5g2807 1974 SMART WD40_4 1567 1607 IPR001680 GO:0005515
Lja5g2807 1974 MobiDBLite consensus disorder prediction 1922 1940 - -
Lja5g2807 1974 MobiDBLite consensus disorder prediction 1890 1908 - -
Lja5g2807 1974 MobiDBLite consensus disorder prediction 990 1012 - -
Lja5g2807 1974 MobiDBLite consensus disorder prediction 990 1049 - -
Lja5g2807 1974 MobiDBLite consensus disorder prediction 1024 1040 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2807 Lja-Chr5 55363010 55373126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2807 1594 1800 U-box Gene Family AT2G33340 25.446 2.00e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2807 K11789 - gmx:100796030 2568.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2807 5 55363010 55373126 Lja5g2807 5 55363010 55373126 ECH