Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2802 ATGGTGGCCGTGGGTGATGATCACAGAGACCAGTTTCCTATTGGAATGCGAGTTCTTGCTGTTGATGATGACCCAACATGCCTCATGATTTTGGAGGCTATGCTCCGGAAGTGTCAATATAAGGTTACTGGAACTGATAATGCAATAACCGCACTGCAGCTGTTGAGAGAAAACAAAGACAAGTTTGACTTGGTAATCACCGATGTCCATATGCCTGAAATTGATGGATTCAAGTTTCTTGAGCTTGTGGGACTTATAATCGACATACCTGTTATATTGTTGTCTGTAAATGGCGACTCGAATATGGTGATGAAGGGAATTACTCACGGCGCTTGTCATTATATGCTGAAACCTGTCAGAGTTGAGGAACTAAAGACCATTTGGCAGCATGTAATCAGGAACAAGAAAATTGGCTCGAAGGAAAAGGAAGGGACCAAAACCAGCAGCGACCATGAGACACTTAATTATAGCGACAATGGTCAAGGGTCGGCAGCCACACCAAATTCAGATCAAAATGGAAAGTCATCCAAGAAAAGAAAGTATCAAGATTTCGATGACGAGGAGCATGAGAATGGTACTGATAGTGGGGACTCATCAGCTCAGAAGAAGCCTCGAGTTGTCTGGTCTGGGGAGCTACACCAAAAATTTCTCGCTGTTGTCAATCAGTTAGGCATTGACAAGGCTGTCCCTAAAAAAGTTCTTAAATTGATGGATGTTGAAAACCTTACAAGGGAGAATGTGGCCAGCCATCTGCAGAAATATAGACTTTATCTGAAAAGAATTAGCTCTATGGCGAACCAACAAGCTAATCCGATATTGGGTTCCGTTTCTCGGAAAAATGCTTTCGGATCCAGATTAAACACTCCTGCCATTCATTCTTCAAGAACACTCCAGGTTGATCAATTTGAATACAGCAAGGGTGTTAGTCATATTCCAAACCAGAACAATACCTTCATGTTGGAAGAAAATCAAAGACCTAGTGAGTTGAGTATCTCAAACAATGACTTGGAAGATAATTCCCAAGACAAACAAACGGGAAGAGTTTCAACTTCATTAGCCCCTCAAGATTCACAATTCTCTCTCCCTCTGCTGGATAATGACAGGTCAAATGATGTTTGCTTAACTGAGTATCTTGCGAATGAATGTTTTGGACCAGCTTCTGTGTCTTGTACAGATAACATGACTCCTGTACCCTGCAACATAAGCTGTAATGCTCCATATGAAGGGTGGGATAATCATAATCAGAATAGCACTTACCATTCTCATGTTAGTGGTAACTCACTAGGCTCTACGATTCCTGCGAATGGTGATCCAGTAAACTCAGCGTTCAATTTTTGCGATCCCTTGCAAATGGACCATGATGAGATCATTGAATTAGCTGAAGAGTGCTCAATTAAACCACATCAGCTACATGTAATAGACCAGCAGAGGTATCAAAACAGTAGCATCTGTAATTGTCTTGGCTCCCCTGAAGACTTGGACAGTGCAATATTGATGAAACAGCTTCAGTGGCTGAGCCTTGGTTGGCTGCGCATGGAGAACTGTCAAGAAGGTGTTTTTCTACACAATGTCACCTTCGGCACTGGTTACCTTCTCGCTGGCCGAAAGAAGGTCAGAATGTTGTTTCTCTGTGCCATCTCCGCTGCTGTTTTCATCTAG 1659 0.4256 MVAVGDDHRDQFPIGMRVLAVDDDPTCLMILEAMLRKCQYKVTGTDNAITALQLLRENKDKFDLVITDVHMPEIDGFKFLELVGLIIDIPVILLSVNGDSNMVMKGITHGACHYMLKPVRVEELKTIWQHVIRNKKIGSKEKEGTKTSSDHETLNYSDNGQGSAATPNSDQNGKSSKKRKYQDFDDEEHENGTDSGDSSAQKKPRVVWSGELHQKFLAVVNQLGIDKAVPKKVLKLMDVENLTRENVASHLQKYRLYLKRISSMANQQANPILGSVSRKNAFGSRLNTPAIHSSRTLQVDQFEYSKGVSHIPNQNNTFMLEENQRPSELSISNNDLEDNSQDKQTGRVSTSLAPQDSQFSLPLLDNDRSNDVCLTEYLANECFGPASVSCTDNMTPVPCNISCNAPYEGWDNHNQNSTYHSHVSGNSLGSTIPANGDPVNSAFNFCDPLQMDHDEIIELAEECSIKPHQLHVIDQQRYQNSSICNCLGSPEDLDSAILMKQLQWLSLGWLRMENCQEGVFLHNVTFGTGYLLAGRKKVRMLFLCAISAAVFI* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2802 552 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 273 IPR045279 GO:0009736
Lja5g2802 552 MobiDBLite consensus disorder prediction 173 187 - -
Lja5g2802 552 SUPERFAMILY CheY-like 15 136 IPR011006 -
Lja5g2802 552 MobiDBLite consensus disorder prediction 324 354 - -
Lja5g2802 552 MobiDBLite consensus disorder prediction 150 172 - -
Lja5g2802 552 Pfam Response regulator receiver domain 18 127 IPR001789 GO:0000160
Lja5g2802 552 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 6 273 - -
Lja5g2802 552 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Lja5g2802 552 SUPERFAMILY Homeodomain-like 201 260 IPR009057 -
Lja5g2802 552 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Lja5g2802 552 MobiDBLite consensus disorder prediction 139 205 - -
Lja5g2802 552 CDD REC_typeB_ARR-like 18 132 - -
Lja5g2802 552 Gene3D - 199 262 - -
Lja5g2802 552 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 259 IPR017930 -
Lja5g2802 552 Gene3D - 16 194 - -
Lja5g2802 552 ProSiteProfiles Response regulatory domain profile. 17 132 IPR001789 GO:0000160
Lja5g2802 552 SMART REC_2 16 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2802 Lja-Chr5 55317536 55321813 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2802 10 269 Response Regulator Gene Family AT2G25180 62.452 2.71e-100 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja5g2802 Response_reg 3.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2802 - K14491 lja:Lj5g3v0659720.1 843.188