Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2799 ATGGAGGGGCTTGGAAAAACAAGGGATGATGAGTATCAAAACAAACATGGAAGTGGTACTTTTGAAGGTCCATCTGGTGATGATCAAGATGCAGGTGATGACCAACAACAAAATAAGAAGAAGAAATACCACAGACATACTCGTCAACAAATTAAGGAGCTTGAAGCTTTGTTCAATGAGACTCCTCATCCCGATGAAGAGCAAAGATTAGATATTAGTAAGAAGCTAGGCTTGGAGACAGATAATGTCAAGTTTTGGTTTCAGAACAAGAGAACCCAAATGAAGGAGCAATTGGAACGCCATGAGAACAAGCATCTAAGGCAAGAAAATGAGAAGCTTCGAGTAGAGAACTATGTTATGCATAAAGCTATGGAAAATGCAACATGCAACAAATGTGATGGTACAATCATTTCTACGGGGAACCAACTGATACTTGAGAATTCTAAACTAAAGGATCAATTGAATCAAATGCATGCCTTAATATCGACTATTCTCATGAAAGCTCTACCAACCCCAAACTCTGGTGTCATTGGAAGATACGAGGTTGGTGGGTCAAGCAATTTTAGCACGCCCTTGTTGCCAATGGGACATGATCTAAGAAATGAAGTTATGGGCACTCCACTCAATACGCTTTCTGGAATCACACCACCAATGGAATTGGTGAGTAGTGAAGCTGAGCTTAAGAGATCTATGTTGTGGAGTCTTGCATTAGCTGCTATGGATGAATTAATTAAGATGGCTGAGCCAGATAGCCCTCTTTGGATCAAGAGTTCAGATGGAGGGAAAGATGTATTAAACCAGGATGAGTATGCAAGGATTTTTTCTCCTTATATTGGTCCAAATCCGATTGGTTATGTAACTGAAGCTTCGAGAGAAACCGGGCTAGTACTTTTCAACAGTTTGTCCCTTGTGGAGACATTGATGGACGCAGATCGTTGGCCAGGAATGTTTCCATCTATGGTTGGTAAAGCTGTAACCGTGGAAGTGATATCAAGTGGCATGAATGGATATATAAGCGGAGCTTTGATAATGATGCAATGTGAGGTTCAATTACCTTCCCCACTTGTCCCAGTTAGGGAATGGAATATCTTGAGATTTTGCCAGCAATATGCAAAAGGTGTATGGGTTGTTGTTGATGTATCTATTGATAATGAAAGTTCATCAATGAGTTACAAGAGGCTTCCTTCCGGATGTATTGTTCATGGCATATCAAATAGTTTGTCCAAGATCACATGGGTTGATCATTCCCAATATGATGAGAGTGTTGTCCACCAACTGTATCGCCCTTTAGTTAATTCGGGCATTGGGTTTGGTGCTCAAAGATGGGTCGCAACTCTCCAAAGGCAGTGTGAATTCATTGCAATGCTCATGTCCTGTTGTGTTCCATCTGCAGACACCCCGGACATAAGCCAAGGTGGTAGGAGAAACATGTTGAGGCTTGCACAACGTATGGCCAATTATTTTTTGTCTGGAATCTGTGCTTCATCTTCTTGCAAGTGGGATATCCTTCACATGGGTAACAATGGCACAAGGTTTATGTCTCGGAAACATGTTAACAACCTTGGTGAAGATCCTGACAATGTCATCAGCGTCACAACTTCTGTTTTGTTGCCAGTGTCGCGGAAAATTTTGTTTGATTTCCTGCGCAAGAGTCGATACAGAGGTCAATGGAACATGTTTTCGAATGATATACCAGAGCAAGAGATTCTTCATTTGAGCAAAGGACAGAAAGAAGGAAATTGTGTTTCAGTCCTCGGGGATTATAATAATGTTGGTAATGAAAATATTATGAGCAACTTGCTTTGGGTGCAAGACTCCTGTGATGACACCTCTGGGTCTATGATAGTGTATTCCCCCATTAATGTTCAATCTTTCAACATGGTGGTGAATGGTGAAGATTCTGTAGATGTTCCTCTCTTGCCTTCAGGCTTTGTTATTCTTCCAGATGGCGCTAGGACTTTACCTGATGGTAGCAGCAGTAGTAGAGGTGGTCGTAACAGCGATGGTGGCAAATGCCTGCTTACATTAGGCTTTCAAATGAATCTGGATAACAACTTCGCAATGGAGTCAGTTGATACTATGAATGGGCTTATCTCATGCACTATTGAGAAGATAAAGGAAGCACTTCTAGTTGCATGA 2139 0.4142 MEGLGKTRDDEYQNKHGSGTFEGPSGDDQDAGDDQQQNKKKKYHRHTRQQIKELEALFNETPHPDEEQRLDISKKLGLETDNVKFWFQNKRTQMKEQLERHENKHLRQENEKLRVENYVMHKAMENATCNKCDGTIISTGNQLILENSKLKDQLNQMHALISTILMKALPTPNSGVIGRYEVGGSSNFSTPLLPMGHDLRNEVMGTPLNTLSGITPPMELVSSEAELKRSMLWSLALAAMDELIKMAEPDSPLWIKSSDGGKDVLNQDEYARIFSPYIGPNPIGYVTEASRETGLVLFNSLSLVETLMDADRWPGMFPSMVGKAVTVEVISSGMNGYISGALIMMQCEVQLPSPLVPVREWNILRFCQQYAKGVWVVVDVSIDNESSSMSYKRLPSGCIVHGISNSLSKITWVDHSQYDESVVHQLYRPLVNSGIGFGAQRWVATLQRQCEFIAMLMSCCVPSADTPDISQGGRRNMLRLAQRMANYFLSGICASSSCKWDILHMGNNGTRFMSRKHVNNLGEDPDNVISVTTSVLLPVSRKILFDFLRKSRYRGQWNMFSNDIPEQEILHLSKGQKEGNCVSVLGDYNNVGNENIMSNLLWVQDSCDDTSGSMIVYSPINVQSFNMVVNGEDSVDVPLLPSGFVILPDGARTLPDGSSSSRGGRNSDGGKCLLTLGFQMNLDNNFAMESVDTMNGLISCTIEKIKEALLVA* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2799 712 SUPERFAMILY Homeodomain-like 20 97 IPR009057 -
Lja5g2799 712 ProSiteProfiles 'Homeobox' domain profile. 37 97 IPR001356 GO:0003677
Lja5g2799 712 MobiDBLite consensus disorder prediction 1 47 - -
Lja5g2799 712 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 6 710 - -
Lja5g2799 712 SMART HOX_1 39 101 IPR001356 GO:0003677
Lja5g2799 712 MobiDBLite consensus disorder prediction 1 16 - -
Lja5g2799 712 Pfam START domain 235 451 IPR002913 GO:0008289
Lja5g2799 712 CDD START_ArGLABRA2_like 229 451 - -
Lja5g2799 712 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 6 710 IPR042160 -
Lja5g2799 712 SUPERFAMILY Bet v1-like 480 685 - -
Lja5g2799 712 SMART START_1 234 452 IPR002913 GO:0008289
Lja5g2799 712 Gene3D - 27 115 - -
Lja5g2799 712 SUPERFAMILY Bet v1-like 229 451 - -
Lja5g2799 712 CDD homeodomain 40 95 IPR001356 GO:0003677
Lja5g2799 712 Coils Coil 91 116 - -
Lja5g2799 712 Pfam Homeodomain 40 95 IPR001356 GO:0003677
Lja5g2799 712 ProSitePatterns 'Homeobox' domain signature. 72 95 IPR017970 GO:0000981|GO:0006355
Lja5g2799 712 CDD bZIP 90 125 - -
Lja5g2799 712 ProSiteProfiles START domain profile. 225 455 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2799 Lja-Chr5 55272885 55275688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2799 7 709 Homeobox Transcription Factor Family AT3G61150 46.721 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja5g2799 START 1e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2799 K09338 - gmx:100794400 748.429