Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2797 ATGGTGGCCGTGGGTGATGATCACAGAGACCAGTTTCCTATTGGAATGCGAGTTCTTGCTGTTGATGATGACCCAACATGCCTCATGATTTTGGAGGCTATGCTCCGGAAGTGTCAATATAAGGTTACTGGAACTGATAATGCAATAACCGCACTGCAGCTGTTGAGAGAAAACAAAGACAAGTTTGACTTGGTAATCACTGATGTCCATATGCCTGAAATCGATGGATTCAAGTTTCTTGAGCTTGTGGGACTTATAGTCGACATACCTGTTATATTGTTGTCTGTTAATGGCGACTCAAATATGGTGATGAAGGGAATTACTCACGGCGCTTGTCATTATATGCTGAAACCTGTTAGAGTTGAGGAGCTAAAGACCATTTGGCAGCATGTAATCAGGAACAAGAAAATTGCCTCGAAGGAAAAGGAAGGGACCAAAACCAGCAGCAACCATGAGACACTTAATTATAGCGACAATGGTCAAGGGTCCGCAGCCACACCAAATTCAGATCAAAATGGAAAGTCATCCAAGAAAAGAAAGTATCAAGATTTCGATGACGAGGAGCATCAGAATGGTACTGATAGTGGGGACTCATCAGCTCAGAAGAAGCCTCGAGTTGTCTGGTCTGGGGAGCTACACCAAAAATTTCTCGCTGTTGTCAATCAGTTAGGCATTGACAAGGCTGTCCCTAAAAAAGTTCTTAAATTGATGGATGTTGAAAACCTTACAAGGGAGAATGTGGCCAGCCATCTGCAGAAATATAGACTTTATCTAAAAAGAGTTAGCTGTGTGACGAACCAACAAGCTAATCCGACATTGGGTTCGCTGAGTGTTTCTCGGAAAAATGCTTTCAGATCCTTCACACCTGATGGGATGATTAGTGGATTGAACACTCCTGCCATTCCTTCTTCAGGAACTCTTCAGGTTGATCAATTTGAACACAGCAAGGGTGTTAGTCATATTCCAAACCAGAACAATACCTTCATGTTGGAAGAAAATCAAAGACCTAGTGAGTTGAGTATCTCAAACAGTGACTTGGAAGATAATTCCCAAGACAAACAAACGGGAAGAGTTTCAACTTCATTAGCCCCTCAAGATTCACAATTCTCTCTCCCTCTGCTGGATAATGACAGGTCAAATGATGTTTTCTCAACTGAGTATCTTGCGAATGAATGTTTTGGACCGGCTTCTGTGTCTTGTGCAGATAACATGACTCCTGTACCCTGGAACATAAGCTGTAATGCTCCATTTAAAGGGTGGGATAATCATAATCAGAATAGCACTTACCATTCTCATGTTGGTGGTAACTCAATAGGCTCCATGATTCCTGCGAATGGTGATCCAGTAAACTCAGCCTTCAATTTTTGCGATCCATTGCAAATGAACCATGATGAGATCATTGAATTAACTGAAGAGTGCTCAATTAAACCACATCAGCTACATGTAATGGACCAGCAGAGGTATCAAAACAGTAGCATCTGTAATAGTCTTGGTTCCCCTGAAGACTTGGACAGTGCAATGATGATGAAACAGGTTGAAGAAGAGACAGGCATCATGTTAAATATAGAAGATCTGATTGACTTCACTGATATAATTGACCTCACTCCTTTTCTGGACTCTTCAACTGGAAACTAA 1635 0.4165 MVAVGDDHRDQFPIGMRVLAVDDDPTCLMILEAMLRKCQYKVTGTDNAITALQLLRENKDKFDLVITDVHMPEIDGFKFLELVGLIVDIPVILLSVNGDSNMVMKGITHGACHYMLKPVRVEELKTIWQHVIRNKKIASKEKEGTKTSSNHETLNYSDNGQGSAATPNSDQNGKSSKKRKYQDFDDEEHQNGTDSGDSSAQKKPRVVWSGELHQKFLAVVNQLGIDKAVPKKVLKLMDVENLTRENVASHLQKYRLYLKRVSCVTNQQANPTLGSLSVSRKNAFRSFTPDGMISGLNTPAIPSSGTLQVDQFEHSKGVSHIPNQNNTFMLEENQRPSELSISNSDLEDNSQDKQTGRVSTSLAPQDSQFSLPLLDNDRSNDVFSTEYLANECFGPASVSCADNMTPVPWNISCNAPFKGWDNHNQNSTYHSHVGGNSIGSMIPANGDPVNSAFNFCDPLQMNHDEIIELTEECSIKPHQLHVMDQQRYQNSSICNSLGSPEDLDSAMMMKQVEEETGIMLNIEDLIDFTDIIDLTPFLDSSTGN* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2797 544 Gene3D - 204 262 - -
Lja5g2797 544 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 306 508 - -
Lja5g2797 544 ProSiteProfiles Response regulatory domain profile. 17 132 IPR001789 GO:0000160
Lja5g2797 544 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Lja5g2797 544 SMART REC_2 16 128 IPR001789 GO:0000160
Lja5g2797 544 MobiDBLite consensus disorder prediction 334 373 - -
Lja5g2797 544 Gene3D - 16 203 - -
Lja5g2797 544 SUPERFAMILY Homeodomain-like 201 260 IPR009057 -
Lja5g2797 544 MobiDBLite consensus disorder prediction 173 193 - -
Lja5g2797 544 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 6 275 - -
Lja5g2797 544 MobiDBLite consensus disorder prediction 149 172 - -
Lja5g2797 544 SUPERFAMILY CheY-like 15 138 IPR011006 -
Lja5g2797 544 MobiDBLite consensus disorder prediction 139 205 - -
Lja5g2797 544 CDD REC_typeB_ARR-like 18 132 - -
Lja5g2797 544 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 275 IPR045279 GO:0009736
Lja5g2797 544 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Lja5g2797 544 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 259 IPR017930 -
Lja5g2797 544 PANTHER TWO-COMPONENT RESPONSE REGULATOR 306 508 IPR045279 GO:0009736
Lja5g2797 544 Pfam Response regulator receiver domain 18 127 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2797 Lja-Chr5 55238579 55240982 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2797 10 300 Response Regulator Gene Family AT2G25180 55.063 2.27e-102 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja5g2797 Response_reg 3.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2797 - K14491 lja:Lj5g3v0659720.1 862.833