Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2790 ATGTTCTCCGTCACCCAATTCGATTCCTCCTCCGGTGGCGGCGGTTTCACCTCCACACAGCTCAACGATTCTTCGCCGGCACCGCAAAAAGGCCGTGAATCGCAGGGTTTGGTTCCGGTGACAGTGAAGCAGATCAATGAAGCCTCTCAGTCTGGTGATGAAAAGTCAAGTTTCGTGATCAACGGTGTAGAACTCACCAATGTGACGCTGGTTGGAATGGTGTTTGAGAAAGCAGAGAGAAACACTGATGTCAATTTTGTTTTAGATGATGGGACAGGGCGAATCAAATGTCGAAGATGGATCAATGATGCTTTCGACACACAGGAAGTGGAAGAAATAATGAATGGTATGTATGTTCGTGTTAATGGGCATTTGAAAAGCTTCCAAGGTGTAAGGCAGGTTGCAGCCTTTTCTGTCAGGCCTGTGGTGAATTTTGATGAGATCCCTTTTCACTTCATTGATTGCATACATCACCACCTCCGCTCCAAATTAAAGATGGAGGGAACCATATCTACAGATCCTCCTGCATCAGACTCATCTTTGAAAACTCCTGTCAGAAACACATCTAATGGATCTCAGGCACCATCATCAACTCCTGCATATGCACAATATGGTGTGGATGGACTCAAGGATTGTGATAAATTGGTTATTGACTATCTGCAGCAGCATTCAGACATGTCGGATGATCGGGGAATACATGCTAACGAGCTATCTCGAGAGCTCAAGCTTCCATTGGACAAGATCATGTTATCGCTGAGGACTCTTGGAGATGATGGTTTAGTATACTCCACCATAGATGACTTCCATTACAAACAAGCTTGA 822 0.4501 MFSVTQFDSSSGGGGFTSTQLNDSSPAPQKGRESQGLVPVTVKQINEASQSGDEKSSFVINGVELTNVTLVGMVFEKAERNTDVNFVLDDGTGRIKCRRWINDAFDTQEVEEIMNGMYVRVNGHLKSFQGVRQVAAFSVRPVVNFDEIPFHFIDCIHHHLRSKLKMEGTISTDPPASDSSLKTPVRNTSNGSQAPSSTPAYAQYGVDGLKDCDKLVIDYLQQHSDMSDDRGIHANELSRELKLPLDKIMLSLRTLGDDGLVYSTIDDFHYKQA* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2790 273 MobiDBLite consensus disorder prediction 172 200 - -
Lja5g2790 273 CDD RPA2_DBD_D 67 160 - -
Lja5g2790 273 Gene3D - 204 273 IPR036388 -
Lja5g2790 273 MobiDBLite consensus disorder prediction 1 37 - -
Lja5g2790 273 PIRSF RPA32 1 273 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja5g2790 273 Pfam Replication protein A C terminal 185 267 IPR014892 -
Lja5g2790 273 SUPERFAMILY Nucleic acid-binding proteins 37 161 IPR012340 -
Lja5g2790 273 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 273 - -
Lja5g2790 273 MobiDBLite consensus disorder prediction 168 200 - -
Lja5g2790 273 MobiDBLite consensus disorder prediction 1 31 - -
Lja5g2790 273 PANTHER REPLICATION PROTEIN A-RELATED 1 273 IPR040260 -
Lja5g2790 273 Pfam OB-fold nucleic acid binding domain 68 140 IPR004365 GO:0003676
Lja5g2790 273 Gene3D - 33 163 IPR012340 -
Lja5g2790 273 SUPERFAMILY "Winged helix" DNA-binding domain 207 271 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2790 Lja-Chr5 55171019 55174971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2790 1 271 Core DNA Replication Machinery Family AT2G24490 45.035 5.23e-81 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2790 K10739 - gmx:100802512 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2790 5 55171019 55174971 Lja5g2790 5 55171019 55174971 ECH