Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja5g2785 | ATGCCAGGATTAACCTGCAACGCTTGCAACACTGAGTTCATCGATGACGCCGACCAAAAACTCCATTACAAATCCGAGTGGCACCGCTACAATCTCAAACGCAAGGTGGCTGGGGTTCCTGGGGTGACTGAAGCTCTGTTTCTGGCTAGACAAGCCGCTCTTGCTGAAGAGAAAGACAAAGCAAATGAAACCGCCATGCTCTATAGCTGTGGCCTCTGTGGGAAGGGTTATAAGAGTTCTAAGGCTCATGCTGAGCATCTTAAGTCACGTGGTCACTTGATGCGTGTTTCTGAAGGAACTAGTCAATCGGATGAGAAGGCAATAGTTAAGCCACTTCCACAACGTTCTGCGAATAGGCCTCCTCCGAGAAGAGAGGTACAGGTCTCTGAAGATGGAGAAAGTGAAGATGAATGGGAGGAGGTTGACCCAGAAGATGATTTGGTTGGCGATGCTGCGAAGTCCTTGACTGAAATGAATGTGGATGAGGATGCTGACAATGATGATGATATGGATGAAGATGATGATGATACTTTTGAGGAGTTAGATCCAGCTTGTTGCTTTATGTGCGATCAAGGGCACAACACAATAGAAAACTGCATGGTTCACATGCACAAGCACCATGGTTTCTTCATTCCAGATATTGAGTATTTGAAGGATCCAAAAGGCCTCCTCACTTATCTTGGCCTTAAGGTCAAACGGGACTACATGTGTCTGTACTGCAATGACCGATGTTATCCTTTCAGCAGCTTGGAAGCAGTCAGGAAACATATGGTGGCAAAAAGTCACTGTAAAGTGCATTTTGGTGATGGAGATGATGAGGAGGAAGTAGAGTTAGAAGATTTCTACGATTACAGCAGCAGTTATGTGGATGAGCAAGGTGAGCAGCTTGTTGTATCTGGTGATACAACCAACAACATAGAACTTTTTGGGGGGTCTGAGCTCGTAATCAGTAGGAAATCTGGTGATAAAACATCAACCAGAACACTAGGTTCACGTGAATTTTTGCGTTATTATCGTCAGAAACCACGGCCATCACCAGCAAATATGGCCATCACTGCTGCATTGGCTTCAAGGTACCGGAGCATGGGTTTGGCTACAGTCCAATCAAGGGAGCAAATTGTGAGGATGAAAGTTCTGAAACAAATGAGCAAGACTGGTGTGGAGAATATGCGCAGCAAAATGGGGATGAAGAGTAATGTCATTCGTAACCTGCCAAAGAATTGCACGTATTAG | 1233 | 0.4526 | MPGLTCNACNTEFIDDADQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQAALAEEKDKANETAMLYSCGLCGKGYKSSKAHAEHLKSRGHLMRVSEGTSQSDEKAIVKPLPQRSANRPPPRREVQVSEDGESEDEWEEVDPEDDLVGDAAKSLTEMNVDEDADNDDDMDEDDDDTFEELDPACCFMCDQGHNTIENCMVHMHKHHGFFIPDIEYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMVAKSHCKVHFGDGDDEEEVELEDFYDYSSSYVDEQGEQLVVSGDTTNNIELFGGSELVISRKSGDKTSTRTLGSREFLRYYRQKPRPSPANMAITAALASRYRSMGLATVQSREQIVRMKVLKQMSKTGVENMRSKMGMKSNVIRNLPKNCTY* | 411 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja5g2785 | 410 | Pfam | C2H2 type zinc-finger (2 copies) | 186 | 287 | IPR041661 | - | |
| Lja5g2785 | 410 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 70 | 92 | IPR013087 | - | |
| Lja5g2785 | 410 | PANTHER | ZINC FINGER PROTEIN-RELATED | 1 | 410 | - | - | |
| Lja5g2785 | 410 | MobiDBLite | consensus disorder prediction | 89 | 177 | - | - | |
| Lja5g2785 | 410 | PANTHER | ZINC FINGER PROTEIN 622 | 1 | 410 | IPR040025 | - | |
| Lja5g2785 | 410 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 28 | IPR013087 | - | |
| Lja5g2785 | 410 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 36 | IPR036236 | - | |
| Lja5g2785 | 410 | SUPERFAMILY | beta-beta-alpha zinc fingers | 65 | 98 | IPR036236 | - | |
| Lja5g2785 | 410 | SMART | c2h2final6 | 235 | 262 | IPR013087 | - | |
| Lja5g2785 | 410 | SMART | c2h2final6 | 68 | 92 | IPR013087 | - | |
| Lja5g2785 | 410 | SMART | c2h2final6 | 184 | 206 | IPR013087 | - | |
| Lja5g2785 | 410 | SMART | c2h2final6 | 4 | 28 | IPR013087 | - | |
| Lja5g2785 | 410 | SMART | ZnF_U1_5 | 65 | 99 | IPR003604 | GO:0003676|GO:0008270 | |
| Lja5g2785 | 410 | SMART | ZnF_U1_5 | 1 | 35 | IPR003604 | GO:0003676|GO:0008270 | |
| Lja5g2785 | 410 | SUPERFAMILY | beta-beta-alpha zinc fingers | 171 | 243 | IPR036236 | - | |
| Lja5g2785 | 410 | MobiDBLite | consensus disorder prediction | 161 | 177 | - | - | |
| Lja5g2785 | 410 | MobiDBLite | consensus disorder prediction | 131 | 146 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja5g2785 | 1 | 410 | C2H2 Transcription Factor Family | AT4G31420 | 64.578 | 0.0 | 523 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja5g2785 | K14816 | - | gmx:100796317 | 662.914 |
Event-related genes