Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2782 ATGTTCCCTGGAACGATTCCAATTGAGGATGTGTTTGAGGAGCTGAAATGTTCAAGAGCAGGTCTATCATCGGAGGAGAGTGCCAACCGGCTTCAAGTCTATGGACCAAACAAATTACAAGAGAAAAAGCCATTGAAGTTCTTGGGATTTATGTGGAACCCCTTGTCATGGGTCATGGAAGCTGCTGCTGTAATGGCCATTGCTTTGGCAAATGGAGGAGGAAGGCCTCCAGATTGGCAAGAATTTTTGGGAATCATTGCTTTACTTTTATTCCACTCCTCGGTGAGTTTCATAGAGGAATTCAATGCTCGCTATGCTGCTGAAGCTCTTATGGCTCGTTTAGCTCCAAAGGCCAAGGTTCTGAGAGACGGTCGATGGAGTGAACAAGACACTGCAACTTTAGTACTAGGTGACATTATCAGCATTAAATCGGGGGATATCGTTCCGGCTGATGTGTGTCTTCTCGAGGGAGATCCTTTGAGTGTTGACCAGTCTGTTTTAACTGGGGAATCTCTTCCTGTGACAAAGAATTCCTCTGATAAAGTGTTCTCCGGATCAACTGTTAAGAAGGGTAATATTGAAGCCGTTGTGATTGCTACTGGGGTGCATACTTTTTCTGGGAAAGCAGCTCATCTGGTGGACTGTACTAACCAAGTTGGACACTTTCCGAAAGTGCTCACAGCAATTAGTAATTTCTGCATTTGCTCAATTGCGGTTGGAATAGTCATCGAGCTTATAGTCATGTATCCGATACAGCACCGCAAGTACAGGGATGGAATTGACAATCTTTTAGTGCTATTGATTGGGGGAATTCCCCATTCCATGCCAACTGTTTTGTTTGTCACTATGGCTATTGGTTCGCACAGTTTTTCCCTGCAAGGTGCGATTATGAAACGAATGACAGCTATTGAGGAAATGGCAGGGATGGACGTCCTCTGCAGTGATAAAACCGGGACTCTCACTTTGAATAAGCTATGTGTTGATAGAAACTTGATTGAAGTCTTTGCCAAGGGTGTTGAGAAGGAGCATGTTATCCTGCTAGCAGCTAGAGCTTCTAGGACTGAAAATCAGGATGCCATAGATGCTGCAATTGTCAAGATGCTTGCAGATCCAAAGGAGTCAAGAGCTGGTATCAGGGAGGTCCATTTTCTTCAATTCAATTCAGTAGACAAGAGGACTGCTCTAACCTACATTGATTCTGATGGAAGTTGGCATCGAGCTAGCAAAGGGGCACCTGAGCAGATAATCAACCTTTGCAACTGCAAAGAGGATGAGGATGTTAGGAAGAAGGTTCATGAAGTAATTGACAAGTTTGCTGAACGTGGAATTCAGTCTTTAGGTGTTGCAAGACAGCAAGTACCAGAGAAAACTAAAGATAGTCCTGGTGGACCGTGGCAATTTGTTGGCCTGGTGCCACTGATTGATTTACCCAGACATGATAGTGCTGAAACCATTAGAAGAGCTCTTAACCTTGGAGTGAATGTGAAGATGATTACCGGGGATCAGCTTGCCATTGGAAAGGAAATCGGCCGAAGGCTTGGAATGGGAACAAACATATACCCTTCATCTGTATTGCTTGGACAAGACAAGGATGCCTATATTTCAGCTCTTCAGGTTGACGAGTTGATTGAGAAGGCTGATGGATTTGCAGTAGTTTTTCCGGAACACAAATATGAAATTATCAAGAGGCTGCAAGAGAGGAAGCATATATGTGGAATGACAGGAGATGGTGTTGATGATGTCCCTGCATTGAAGAAAGCGGATATTGGAATAGCTGTTGCTGATGCTACAGATGCTGCTAGAAGTGCTTCTGATATTGTCCTCACTGACCATGGTTTAAGAGTGATTATTAGTGTAGTGATAACCAGTAGGGAGATTCTTCAGAGGATGAAGAATTATACTATTTATGCCGTGTCAATCACTATTCATATGGTGTTTGGTTTCTTATTTATTGCGTTAATCTGGAAGTTTGATTTTGCACCCTTCATGGTTTTGGTTATGGCCTTCCTCAATGATGGCCCCATTATGGCATTACCCGGGGATAGAGTGAAACTGAAACCATCACCATTTCCTGAGAGCTGGAAACTGAGGGAGATCTTTGCTACTGGTGTTGTACTTGGCAGTTACTTAGCACTAATGACTGTAATTTTTTTCTGGGTGATGAAAGATACTGACTTCTTCCCGAACAAGTTTGGTGTGAGGTCTTTGAGATATAGCTCTGATGAGATGATGGCAGCTTTATATCTACAAGTCAGTATAATAAGCCAGGCCCAAATTTTTGTCTTTAGGTCCCGCAGCTGGTCTTTTGTTGAAAGACCTAGTCTTTTCCTACTAATTACTTTTATGTTTTCTGAACTGCTGACAACTTTGGTAGCAGTATATGCGGACTTGTTCTTTGCAAGAATAACGGGAATCGGATGGGGTTGGGCTGGTGTAATCTGGCTGTACAGTTTGAACGCCTTCACTACAAAGAAAGGTTATGGCAAAGAAGAGAGGGAAGTTCAGTGGGCGGTGGCACAGAGGACACTTCAGAAGCCTCCAATCTTTTCAATGAGAAAAATTGCTATAGGGAGCTTTCAGAGATTGCACAGCAAGCCAAAATACGCGCTGAAGTTGCAAGGTGATAGAGTTAGGCCCGTGAAAGTTATTGGTAGTTTTATAAAATAA 2667 0.4316 MFPGTIPIEDVFEELKCSRAGLSSEESANRLQVYGPNKLQEKKPLKFLGFMWNPLSWVMEAAAVMAIALANGGGRPPDWQEFLGIIALLLFHSSVSFIEEFNARYAAEALMARLAPKAKVLRDGRWSEQDTATLVLGDIISIKSGDIVPADVCLLEGDPLSVDQSVLTGESLPVTKNSSDKVFSGSTVKKGNIEAVVIATGVHTFSGKAAHLVDCTNQVGHFPKVLTAISNFCICSIAVGIVIELIVMYPIQHRKYRDGIDNLLVLLIGGIPHSMPTVLFVTMAIGSHSFSLQGAIMKRMTAIEEMAGMDVLCSDKTGTLTLNKLCVDRNLIEVFAKGVEKEHVILLAARASRTENQDAIDAAIVKMLADPKESRAGIREVHFLQFNSVDKRTALTYIDSDGSWHRASKGAPEQIINLCNCKEDEDVRKKVHEVIDKFAERGIQSLGVARQQVPEKTKDSPGGPWQFVGLVPLIDLPRHDSAETIRRALNLGVNVKMITGDQLAIGKEIGRRLGMGTNIYPSSVLLGQDKDAYISALQVDELIEKADGFAVVFPEHKYEIIKRLQERKHICGMTGDGVDDVPALKKADIGIAVADATDAARSASDIVLTDHGLRVIISVVITSREILQRMKNYTIYAVSITIHMVFGFLFIALIWKFDFAPFMVLVMAFLNDGPIMALPGDRVKLKPSPFPESWKLREIFATGVVLGSYLALMTVIFFWVMKDTDFFPNKFGVRSLRYSSDEMMAALYLQVSIISQAQIFVFRSRSWSFVERPSLFLLITFMFSELLTTLVAVYADLFFARITGIGWGWAGVIWLYSLNAFTTKKGYGKEEREVQWAVAQRTLQKPPIFSMRKIAIGSFQRLHSKPKYALKLQGDRVRPVKVIGSFIK* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2782 888 Pfam E1-E2 ATPase 114 288 - -
Lja5g2782 888 Pfam Cation transporter/ATPase, N-terminus 6 65 IPR004014 -
Lja5g2782 888 PANTHER PLASMA MEMBRANE ATPASE 820 844 - -
Lja5g2782 888 Pfam haloacid dehalogenase-like hydrolase 309 588 - -
Lja5g2782 888 SUPERFAMILY Calcium ATPase, transduction domain A 116 213 IPR008250 -
Lja5g2782 888 SUPERFAMILY HAD-like 309 620 IPR036412 -
Lja5g2782 888 PANTHER PLASMA MEMBRANE ATPASE 5 818 - -
Lja5g2782 888 SFLD Haloacid Dehalogenase 295 625 - -
Lja5g2782 888 PANTHER CALCIUM-TRANSPORTING ATPASE 820 844 - -
Lja5g2782 888 PANTHER CALCIUM-TRANSPORTING ATPASE 5 818 - -
Lja5g2782 888 Gene3D - 325 474 IPR023299 GO:0000166
Lja5g2782 888 Gene3D - 310 611 IPR023214 -
Lja5g2782 888 SUPERFAMILY Calcium ATPase, transmembrane domain M 5 820 IPR023298 -
Lja5g2782 888 PRINTS H+-transporting ATPase (proton pump) signature 748 769 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja5g2782 888 PRINTS H+-transporting ATPase (proton pump) signature 546 562 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja5g2782 888 PRINTS H+-transporting ATPase (proton pump) signature 574 590 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja5g2782 888 PRINTS H+-transporting ATPase (proton pump) signature 605 630 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja5g2782 888 PRINTS H+-transporting ATPase (proton pump) signature 431 449 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja5g2782 888 Gene3D - 78 802 - -
Lja5g2782 888 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 549 664 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja5g2782 888 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 85 522 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja5g2782 888 CDD P-type_ATPase_H 21 821 IPR006534 GO:0008553|GO:0016021|GO:0120029
Lja5g2782 888 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 21 794 IPR006534 GO:0008553|GO:0016021|GO:0120029
Lja5g2782 888 SFLD p-type atpase 295 625 IPR044492 -
Lja5g2782 888 ProSitePatterns E1-E2 ATPases phosphorylation site. 315 321 IPR018303 -
Lja5g2782 888 Gene3D - 116 200 - -
Lja5g2782 888 PRINTS P-type cation-transporting ATPase superfamily signature 163 177 - -
Lja5g2782 888 PRINTS P-type cation-transporting ATPase superfamily signature 574 593 - -
Lja5g2782 888 PRINTS P-type cation-transporting ATPase superfamily signature 313 327 - -
Lja5g2782 888 PRINTS P-type cation-transporting ATPase superfamily signature 469 480 - -
Lja5g2782 888 PRINTS P-type cation-transporting ATPase superfamily signature 597 609 - -
Lja5g2782 888 PRINTS P-type cation-transporting ATPase superfamily signature 491 501 - -
Lja5g2782 888 SMART Cation_ATPase_N_a_2 2 71 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2782 Lja-Chr5 55061392 55066360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2782 6 847 Primary Pumps ATPases AT2G07560 71.918 0.0 1263