Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2779 ATGGGTGAATATTCTGGTAAAAGAGGCATTAATGGGGTGGTAGTCCCTAGAAAAAATATGGGCCTTTTATTTAGAGATACTGCTAATACTAGAGATCGAAATGGAAAAAATTGCAGTCGACTGGGCTGCAGCAGCAAAGTTAACCCTATGAAAGTTGCTCATATCAGATCTTCTGAAGAAGGTATATCTTTGAGGTCTTCAATGCGGTCCTCTTCAAGTTGCAAGGAGGCTATTGGATGTTCCTCTAGAACGACTAGAAACCCAGGAAAACCCTCTATAGAGCGTCAGAAAATGTTATCCTTCGAGTCAGATTCATCTGATACACTGCTGAAAAGGAATTCAATAGAGTCTAGTAATGTGATGCGAATGAAAGTACAAAGCTCTAGTGTAGCATCAGATACCCAATCTCAAAGGAATTTTGATCGAAGGCCTGGGCTACGTCAGCAAGAAATTAAAAGTACTAGTCCCGTGACACGTGCTGTTGCTAGCAAGTATGGGCTGCAAAACCTCAGATGCAACACTATATCTGACATTATCCCAACTGGTTGTTCATCATCAGATTCAACCTTTAATAAAAGGAAGGGAATGATAAAAAAGAGAAACTGTGAGGGGGAAAGTAGTTCCACTGTTAGAGGGAAAAAGATGACGGGCTCTTCAATGGAAGGACTGAATTCTGGCCCTAGAAATTCCATATGTATATCCGATTCAAGAAGATCCATAAATGTTCCTTCTCACAGGGACAGTATCACAGCATCAGTTAGAGCTCAAAGATCAATTAGTAGTCGTGCTAGGGGAAGATTTTCTAGCCAAGGAAATGAACACCAAAGGGCGACTAATGTGTCCCCTGTTACGGTACCTCTATTGCCTCATTCTGGCAATGCTCCTGGCATTTCATACCCTTTAGGTCGTCCAAGCTCTTTTAGTAGACCAATTTCTAGCAGTGAGCAGTTGTATGGTGTTATGCCTGTATCTCCTGCAGAATATAGCACTGCTCTAACTAGTCAGGACCGCTTTCGTCGCTACAACATAGATGGTATTGCAGAGGTATTATTGGCACTTGAGAGAATAGAACAAGATGAAGAGCTAACCCACGAGCAAATTCTCTTACTAGAGACCAACTTGTTCCTCAGTGGACTAAACTTTGATCATCATAGAGACATGCGGTTGGATATTGACAGCATGTCATATGAGGAACTCTTATCTCTGGAAGAGAAGATGGGAACTGTAAGCACAACTCTAACAGAGGAAGCACTTTCAGCATGCCTCAAGAGAAGTATCTTTGAGCCTGGACCTACAGAAGAAGCAGCTGAGGATTATAATGAGGATAAGGATGATATCAAATGCTGCATTTGCCAGGAGGAATATATTGTTGCAGATGAAGTTGGCACTCTACAATGCGAGCATATATTTCATGTGGTTTGCATACAGGAGTGGCTGCGGCTGAAGAATTGGTGCCCTATTTGCAAAGAAGAAGCCGCACTGTCCAATTCATCTTCAACCCAGTGA 1506 0.4223 MGEYSGKRGINGVVVPRKNMGLLFRDTANTRDRNGKNCSRLGCSSKVNPMKVAHIRSSEEGISLRSSMRSSSSCKEAIGCSSRTTRNPGKPSIERQKMLSFESDSSDTLLKRNSIESSNVMRMKVQSSSVASDTQSQRNFDRRPGLRQQEIKSTSPVTRAVASKYGLQNLRCNTISDIIPTGCSSSDSTFNKRKGMIKKRNCEGESSSTVRGKKMTGSSMEGLNSGPRNSICISDSRRSINVPSHRDSITASVRAQRSISSRARGRFSSQGNEHQRATNVSPVTVPLLPHSGNAPGISYPLGRPSSFSRPISSSEQLYGVMPVSPAEYSTALTSQDRFRRYNIDGIAEVLLALERIEQDEELTHEQILLLETNLFLSGLNFDHHRDMRLDIDSMSYEELLSLEEKMGTVSTTLTEEALSACLKRSIFEPGPTEEAAEDYNEDKDDIKCCICQEEYIVADEVGTLQCEHIFHVVCIQEWLRLKNWCPICKEEAALSNSSSTQ* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2779 501 MobiDBLite consensus disorder prediction 60 91 - -
Lja5g2779 501 MobiDBLite consensus disorder prediction 187 278 - -
Lja5g2779 501 SUPERFAMILY RING/U-box 442 492 - -
Lja5g2779 501 ProSiteProfiles Zinc finger RING-type profile. 448 489 IPR001841 -
Lja5g2779 501 MobiDBLite consensus disorder prediction 57 94 - -
Lja5g2779 501 MobiDBLite consensus disorder prediction 192 207 - -
Lja5g2779 501 MobiDBLite consensus disorder prediction 123 142 - -
Lja5g2779 501 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 493 - -
Lja5g2779 501 MobiDBLite consensus disorder prediction 123 157 - -
Lja5g2779 501 Pfam Ring finger domain 447 489 IPR001841 -
Lja5g2779 501 SMART ring_2 448 488 IPR001841 -
Lja5g2779 501 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 493 IPR045191 GO:0061630
Lja5g2779 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 493 IPR013083 -
Lja5g2779 501 MobiDBLite consensus disorder prediction 208 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2779 Lja-Chr5 55025785 55030444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2779 346 492 C3H Transcription Factor Family AT2G15530 41.611 8.21e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2779 - - lja:Lj0g3v0129149.2 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2779 5 55025785 55030444 Lja5g2779 5 55025785 55030444 ECH
Lja5g2779 5 55025785 55030444 Lja1g3795 1 47788194 47792937 PCT