LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g2772	ATGTCTCGTGTGTATGTTGGTAACCTGGATTCCAGAGTGTCAGAGAGGGACCTTGAAGATGAATTTCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGGAGACCACCAGGTTATGCTTTTATTGACTTTGATGATCGCCGAGATGCACAGGATGCCATTCGTGAATTAGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAATTCTAGAGGTGGAGGTGGCGGTGGAGGTGGTGGTCGTGGTGGTGGACGCTCTGGTGGTGGTGGCGGTGGTTCTGATATGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGCCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGAAGTCCACCTCGATTTCGTAGGAGCCCAAGTTATGGGCGAAGAAGTTATAGTCCTCGTGGGCGCTCCCCTAGACGCCGCAGTGTTTCACCTCATGGTCGCGGCAGCTACAGCAGGTCACCACCTCCTTACCGTGCCCGTGAGGAGGTGCCTTATTCTAATGGAAATGGCCTTAGGGAAAGGCGCCGAAGCAGAAGTTGA	570	0.5246	MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGGGGGRGGGRSGGGGGGSDMKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPHGRGSYSRSPPPYRAREEVPYSNGNGLRERRRSRS*	190

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g2772	189	ProSiteProfiles	Zinc finger CCHC-type profile.	98	113	IPR001878	GO:0003676\|GO:0008270
	Lja5g2772	189	Gene3D	-	98	151	-	-
	Lja5g2772	189	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Lja5g2772	189	MobiDBLite	consensus disorder prediction	66	189	-	-
	Lja5g2772	189	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	181	-	-
	Lja5g2772	189	SMART	rrm1_1	3	69	IPR000504	GO:0003723
	Lja5g2772	189	Pfam	Zinc knuckle	98	113	IPR001878	GO:0003676\|GO:0008270
	Lja5g2772	189	SUPERFAMILY	Retrovirus zinc finger-like domains	81	117	IPR036875	GO:0003676\|GO:0008270
	Lja5g2772	189	SMART	c2hcfinal6	98	114	IPR001878	GO:0003676\|GO:0008270
	Lja5g2772	189	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1	2	181	-	-
	Lja5g2772	189	SUPERFAMILY	RNA-binding domain, RBD	3	92	IPR035979	GO:0003676
	Lja5g2772	189	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Lja5g2772	189	CDD	RRM_SRSF3_like	3	71	-	-
	Lja5g2772	189	Gene3D	-	1	97	IPR012677	-
	Lja5g2772	189	MobiDBLite	consensus disorder prediction	103	118	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g2772	Lja-Chr5	54925874	54928949	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g2772	2	60	Eukaryotic Initiation Factors Gene Family	AT2G36660	39.683	6.52e-06	43.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g2772	K12896		-	gmx:100790689	239.58