Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2768 ATGGCGGCGTCGCGGCGGCTCCGGGAGCTGCAATCGATGCCGGGGAACAAGATCTGCGTTGACTGTTCCCAGAAGAATCCTCAGTGGGCCTCCGTCTCCTACGGCATCTTCATGTGTCTCGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTCCACATCTCCTTCGTCCGATCCGTCACCATGGACGCCTGGTCCGAGATCCAGATCAAGAAGATGGAGGCAGGTGGCAACGACAGCCTCAACGCCTTCCTCGCTCGCTACTCCATCCCCAAGGAAACCGACATCGTCACCAAGTACAACACCAACGCCGCCACGCTCTACCGCGATCGCATCCAGGCCATCGCCGACGGCCGTCCCTGGCGTGATCCGCCTGTTGTCAAGGAGAATTTGTCTGCTAAGCCGCCGCTTTCGCAGCCTCGCCGGAACGGCGGAGGTGGAGGCGGAGGCTGGGATGATTGGGGTAACGATGGCGCGGATGTTAGGAGCAGGTCGACCGGGGACTTCAGGAGCATGAGCGGTGGCGGCGCGCCGGTGAAGTCGAGGTCGTCGGAGGATATTTACACGCGGTCGCAGCTGGAGGCTTCGGCGGCGAATAAGGAGGGCTTCTTCGCTAGGAAGATGGCGGAGAACGAGTCGCGACCGGATGGGCTTCCGCCGTCGCAGGGTGGGAAGTACGTCGGGTTTGGATCCAGCCCTGCGCCACCGTCGCAGAGGAGCAATCCGCAAAACGACTATTTGTCTGTCGTTTCACAGGGGATTGGTAAATTGTCGCTGGTTGCTGCCTCTGCGGCACAGTCTGCTGCTACTGTTGTTCAGGCAGGCACAAAAGAGCTCACTTCTAAGGTCAAGGAAGGTGGTTATGATCAAAAGGTCAATGAAACTGTCACTGTTGTCAGTCAAAAGACATCAGAGATTGGACAGAGGACTTGGGGTTTAATGAAAGGGGTCATGGCTATAGCTTCACAGAAGGTTGAAGAGTTAACCAGAGATAACCCAAATTGGAAGACTAATAACTGGCAACAAAATGAGAATGATAGAAATGGTTACTATCAGGATTTCAATAGTGAGAATAAAGGCGGGAGTTCTTCTGCTGTTAGAGAACAATCTTCATCAGGACAGTTTAAAACACAAAGCTCCAGCTCTTGGGATGATTGGGACCACAAAGACCCTAGGAAGGAAGAACCAGCTAAAAAATCGCCTCCACTGTCATCTGGTGAGCAGTTTGGTACTTCCAACTCAAGCTCTTGGGATGATTGGGACCACAAAGACTCTCGGAAGGAAGAACCAGCTAAAGGATTGGCTCCTCATAATCATGATGATGGTTGGGCTGGCTGGGATAATAATGCCAAAGATGATGGATTTGATAATTTTTATGAGGATGAATATAATAAGAAAGCTCCTGGTCATAACGGGAAATCCGATTCCAATTGGACAGGAGGAGGCTTTCTCTAA 1452 0.531 MAASRRLRELQSMPGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQIKKMEAGGNDSLNAFLARYSIPKETDIVTKYNTNAATLYRDRIQAIADGRPWRDPPVVKENLSAKPPLSQPRRNGGGGGGGWDDWGNDGADVRSRSTGDFRSMSGGGAPVKSRSSEDIYTRSQLEASAANKEGFFARKMAENESRPDGLPPSQGGKYVGFGSSPAPPSQRSNPQNDYLSVVSQGIGKLSLVAASAAQSAATVVQAGTKELTSKVKEGGYDQKVNETVTVVSQKTSEIGQRTWGLMKGVMAIASQKVEELTRDNPNWKTNNWQQNENDRNGYYQDFNSENKGGSSSAVREQSSSGQFKTQSSSSWDDWDHKDPRKEEPAKKSPPLSSGEQFGTSNSSSWDDWDHKDSRKEEPAKGLAPHNHDDGWAGWDNNAKDDGFDNFYEDEYNKKAPGHNGKSDSNWTGGGFL* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2768 483 MobiDBLite consensus disorder prediction 331 380 - -
Lja5g2768 483 MobiDBLite consensus disorder prediction 381 399 - -
Lja5g2768 483 CDD ArfGap_ArfGap1 3 117 - -
Lja5g2768 483 MobiDBLite consensus disorder prediction 329 483 - -
Lja5g2768 483 SUPERFAMILY ArfGap/RecO-like zinc finger 5 111 IPR037278 -
Lja5g2768 483 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 84 IPR001164 GO:0005096
Lja5g2768 483 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Lja5g2768 483 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 400 - -
Lja5g2768 483 MobiDBLite consensus disorder prediction 452 468 - -
Lja5g2768 483 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 404 483 - -
Lja5g2768 483 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 400 IPR044519 GO:0005096|GO:0016192
Lja5g2768 483 Pfam Putative GTPase activating protein for Arf 5 94 IPR001164 GO:0005096
Lja5g2768 483 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 404 483 IPR044519 GO:0005096|GO:0016192
Lja5g2768 483 MobiDBLite consensus disorder prediction 209 243 - -
Lja5g2768 483 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Lja5g2768 483 MobiDBLite consensus disorder prediction 118 186 - -
Lja5g2768 483 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Lja5g2768 483 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Lja5g2768 483 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Lja5g2768 483 MobiDBLite consensus disorder prediction 416 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2768 Lja-Chr5 54774462 54778401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2768 5 87 C2H2 Transcription Factor Family AT4G05330 47.619 1.07e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2768 K12492 - gmx:100806519 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2768 5 54774462 54778401 Lja5g2768 5 54774462 54778401 ECH
Lja1g0941 1 9246659 9250926 Lja5g2768 5 54774462 54778401 PCT