Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2760 ATGATGGGAGAGGAAGCGGTTTGCCTCGTGCAGGCATTGGCAGCGGATGGAGTGAAGGGAAACAATGAGGAATCGAGGGCGGAACTGAAGCGGGATTTCCACCAATGTGTTGCTGATACTGAGCCTGAACAACTGTCTCCGAACAAGAAACAAGCGAAAGAAGTTTCGAATGATGAAGTGCGCTCGGAGGTTTCCAACCCGAACATTTCAGCGACGGAGAACGCGCTGGCTTTTCAAGATATCAGTAGCCAACCGACTGAATCGGAGAATGCTCACCACGCTGAGTGTGGGGAACTAACTTCCACTTGCCTGGAGAATTCGAGTTCTTATGGGTCGTTGAGTGATGAAGCGGGTGTTCAGGACAATAATCATAGTAGTAATGATATTGATAATGATAACAATAACAATAACGATACTTCTCAGAATGGTAAGGACACGAGTACTTCCCGTGTTGTGTTGGAAATCCCCAAGCATGCTAGTTCGACTGGGATCAGAAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATTGCTATCAACCACCTGCAAAGGATGATAATGAGAGCTCGTGTGGAATGGGTTATGTTCGAGATGGAGACTTGGATTTGTACACTCGCAATATGGAATTGAAAATGTCAAAGAAAGTAGTCCCTGATTGCTACCCTACAAATGTCAAAAAGCTGTTATCAACTGGTATCCTTGACGGAGCTGTAGTGAAATATATTTACAACCCATTAAAGGTTGAGCTCCAGGGGATTATTAGTGGTGGTGGATATTTGTGTGGCTGTTCAATGTGCAACTACTCCAGAGTGCTTAGTGCATATGAATTCGAGCAGCATGCCGGTGCGAAAACTAGACATCCAAATAATCATATATTCCTTGAAAATGGAAGACCAGTATATAGTATTATACAGGAAATAAAAACTTCCCCACTCAGTGTCCTAGATGAGGTTATAAAGAACGTGGCTGGTGCATCTGTCAACGAGGAGTGCTTCCAGCTTTGGAAAGAAAGTCTTCTACAAAGCAACGAGAGGGATCAGTCTTGTAAAAATTTTAGTGCTAAGTCAGTTAGCAATAGCACGCCTCGTACAAGCATCAGTCAATCTGTAGAAAGTTCGGGCCACTGGTCATCTTTGCATGCGCCAAGTCATTTTGAGCAGCAAATGTATGTGAGTCAGACAACTGATGAGTGGAAACGTCTGGTGAAAAAGCCAAGCTCCAACTCAGGTTTATTGCTGAAGAAAAGTGCTGATGGTTGCACCAAGAGAAGGGACAACGATTTGCACCGGTTACTTTTTATGCCTAATGGACTACCGGATGGTGCTGAGTTGGCTTACTACGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGAAATGGTATAGTCTGTAGTTGTTGTGACATAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTCGACGTCAACCTTACCGACACATATATACTTCCAATGGATTAACACTTCATGATATAGCTCTCTCTTTGGCAAATGGTCAAAACCTTACCACGGGAGATAGTGATGATATGTGTGCAATATGTGGAGATGGAGGAGATTTAATTCTTTGCAACGGGTGCCCTAGGGCCTTTCATGCAGCCTGCTTGGGTTTACAGTGTGTTCCAGATGGTAGTTGGCATTGTCTAAATTGTAGAGATAATGGAAGAGAGTCTTCTATTGCGAGGCCAATCATGATACGGTTGACGCGGGTTGATAAAGCACCGGAATATGAAATGGGTGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGAAAAATTTGATGACCGAACAGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCACGTTGGTTGCTTGCGGGACATTGGGCTCTGCGAGTTGAAAGAGCTGCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGAATATATGTGGCTCTACAGAATTCAGTTTCTGCTGGTGCAGAAATTATACCATCTAGCTTGTCGGAACTAATAATCAGGAAGCATCAGGATAAGGGATTATATACTTCTGGAGGCGTTAATGATGTTCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCAGAGCATTTACCGTTACTCTCACGGGCTGCTGCAATTTTTCGAGAGTGTTTTGATCCCATCGTTGCAATATCTGGCCGTGATCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAATTTGGGGGGATGTACTGCATTGTTTTAATCGTGAATTCTGTTGTTGTATCTGCTGGACTTCTGAGGATTTTTGGCAGTTATGTTGCCGAGCTTCCACTAGTAGCTACAAGCAGAGAACATCAAGGAAAAGGTTATTTTCAAGTGTTATTCTCCTGCATAGAGAGGTTGCTATCTTCTCTAAATGTAGAAAAGCTGGTGCTTCCTGCAGCAGGGGATGCCGAGTCAATTTGGACTAAGAAATTAGGCTTCCGAAAGATGAGTGAAGATCAGGTAACTAAATGTGTAAGAGAGGTGCAGCTCACCCTCTTCAACAAAACTTCAATGCTGGAGAAGACAGTGCAGTTAGCAACAGAATGA 2598 0.4326 MMGEEAVCLVQALAADGVKGNNEESRAELKRDFHQCVADTEPEQLSPNKKQAKEVSNDEVRSEVSNPNISATENALAFQDISSQPTESENAHHAECGELTSTCLENSSSYGSLSDEAGVQDNNHSSNDIDNDNNNNNDTSQNGKDTSTSRVVLEIPKHASSTGIRKITFKFSKKKEDYCYQPPAKDDNESSCGMGYVRDGDLDLYTRNMELKMSKKVVPDCYPTNVKKLLSTGILDGAVVKYIYNPLKVELQGIISGGGYLCGCSMCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPVYSIIQEIKTSPLSVLDEVIKNVAGASVNEECFQLWKESLLQSNERDQSCKNFSAKSVSNSTPRTSISQSVESSGHWSSLHAPSHFEQQMYVSQTTDEWKRLVKKPSSNSGLLLKKSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCSCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAICGDGGDLILCNGCPRAFHAACLGLQCVPDGSWHCLNCRDNGRESSIARPIMIRLTRVDKAPEYEMGGCVVCREHDFSVEKFDDRTVIICDQCEKEYHVGCLRDIGLCELKELPKDKWFCCDDCNRIYVALQNSVSAGAEIIPSSLSELIIRKHQDKGLYTSGGVNDVQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGSYVAELPLVATSREHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQVTKCVREVQLTLFNKTSMLEKTVQLATE* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2760 865 MobiDBLite consensus disorder prediction 38 70 - -
Lja5g2760 865 ProSitePatterns Zinc finger PHD-type signature. 594 649 IPR019786 -
Lja5g2760 865 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 749 835 IPR016181 -
Lja5g2760 865 MobiDBLite consensus disorder prediction 107 150 - -
Lja5g2760 865 SUPERFAMILY FYVE/PHD zinc finger 519 565 IPR011011 -
Lja5g2760 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 591 IPR013083 -
Lja5g2760 865 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 25 861 - -
Lja5g2760 865 CDD NAT_SF 753 814 - -
Lja5g2760 865 ProSitePatterns Zinc finger PHD-type signature. 524 563 IPR019786 -
Lja5g2760 865 CDD PHD1_AIRE 523 563 - -
Lja5g2760 865 ProSiteProfiles Zinc finger PHD-type profile. 521 566 IPR019787 -
Lja5g2760 865 PANTHER AUTOIMMUNE REGULATOR 25 861 - -
Lja5g2760 865 SUPERFAMILY FYVE/PHD zinc finger 591 647 IPR011011 -
Lja5g2760 865 Pfam Tify domain binding domain 457 506 IPR032308 -
Lja5g2760 865 Pfam Tify domain binding domain 253 307 IPR032308 -
Lja5g2760 865 SMART PHD_3 593 650 IPR001965 -
Lja5g2760 865 SMART PHD_3 523 564 IPR001965 -
Lja5g2760 865 Gene3D - 741 847 - -
Lja5g2760 865 MobiDBLite consensus disorder prediction 46 60 - -
Lja5g2760 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 592 652 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2760 Lja-Chr5 54667989 54678620 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2760 2 865 PHD Transcription Factor Family AT3G53680 55.017 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2760 - - lja:Lj5g3v0614410.1 1487.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2760 5 54667989 54678620 Lja5g2760 5 54667989 54678620 ECH