Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2748 ATGAAGAGACAGAGAGATGAACAAGGATTCCAGAACATAGATTTGGCAAATTGTCTAATGCTACTCTCTCATCCCATAGAAACTACCAAATGCAAACCCCAGAAACGTTTCAGCCCTGTGGAATTCGAGTGCATCACATGCAACCGCAAATTCTCATCCTTTCAAGCCCTCGGAGGCCACAGAGCGAGCCACAAGAAGCTGAAGCGCGACAGAGAAGAATTCAAATCAGATGTCAAAACTGATCTGAGATTGGGAAACAAATATTCCAAAATGCATGAGTGTTCCATTTGTGGTCAAGAATTTGCACTGGGTCAGGCACTTGGAGGACACATGAGAAGGCACAGGGTTTCTACCAATGAAGGGTTGTTTTCACAGGTTGTTATGAAAGTTCCTGTTCTGAAAAGATCGAATAGTTTTAGGGTTATGTGCTTGGACTTGAACTTGACGCCATTGCAGAATGATTTGAAGTTGTTGTTTGGAAACATGGCACCCAAAATGGATTCCTTTGTCATCTAA 516 0.4264 MKRQRDEQGFQNIDLANCLMLLSHPIETTKCKPQKRFSPVEFECITCNRKFSSFQALGGHRASHKKLKRDREEFKSDVKTDLRLGNKYSKMHECSICGQEFALGQALGGHMRRHRVSTNEGLFSQVVMKVPVLKRSNSFRVMCLDLNLTPLQNDLKLLFGNMAPKMDSFVI* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2748 171 Gene3D Classic Zinc Finger 40 114 - -
Lja5g2748 171 SMART c2h2final6 92 114 IPR013087 -
Lja5g2748 171 SMART c2h2final6 42 64 IPR013087 -
Lja5g2748 171 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Lja5g2748 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Lja5g2748 171 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Lja5g2748 171 PANTHER ZINC FINGER PROTEIN ZAT5 1 165 - -
Lja5g2748 171 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 165 - -
Lja5g2748 171 SUPERFAMILY beta-beta-alpha zinc fingers 42 114 IPR036236 -
Lja5g2748 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Lja5g2748 171 Pfam C2H2-type zinc finger 92 115 - -
Lja5g2748 171 Pfam C2H2-type zinc finger 42 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2748 Lja-Chr5 54468858 54469498 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2748 1 167 C2H2 Transcription Factor Family AT2G37430 48.876 7.38e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g2748 zf-C2H2_6 5.3e-09 CL0361