Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2746 ATGACCATGATCAACAACAACAACAAGAGACAAAGAGATCAAACCCAACAAAACAACAAAGAGAGCATCGATTTGGCAACTAGCCTAATGCTTCTCTCTCGCACCCAAACCCAAACCCAAACAAAACCGCATACAGAGTTCGAGTGCAAGACATGTAACCGCAAATTCTCGTCATTCCAAGCACTTGGTGGCCACAGAGCTAGCCACAAGAAACCAAAACTCACTGGAGAAGAAGAGTTGAAATTCTCAGCGGCCAAACCGAGTAAGCCTAAAATGCATGCATGCTCGATTTGTGGTCAGGAGTTTTCTCTAGGACAGGCTTTGGGAGGACACATGAGGAGGCATAGGGGAGATTTCAATGAAGAACAAGGTTTTCGGTTTTCTTCTATCAAACATAGTGAGAAGATTTCTGAAGCTGTGAAATCAACGCCGGTTTTGAAAAGGTCGAATAGCAAGAGGGTTATGTGCTTGCAGATGGACTTGAATTTGACGCCACTGGAGAATGATTTGAAGATCTTGTTTGGAAACAAGGCGCCTAGAGTTGATCTTGCTCTTTTCTGA 561 0.4385 MTMINNNNKRQRDQTQQNNKESIDLATSLMLLSRTQTQTQTKPHTEFECKTCNRKFSSFQALGGHRASHKKPKLTGEEELKFSAAKPSKPKMHACSICGQEFSLGQALGGHMRRHRGDFNEEQGFRFSSIKHSEKISEAVKSTPVLKRSNSKRVMCLQMDLNLTPLENDLKILFGNKAPRVDLALF* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2746 186 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Lja5g2746 186 Gene3D Classic Zinc Finger 18 84 - -
Lja5g2746 186 Gene3D Classic Zinc Finger 85 153 - -
Lja5g2746 186 SUPERFAMILY beta-beta-alpha zinc fingers 47 115 IPR036236 -
Lja5g2746 186 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Lja5g2746 186 Pfam C2H2-type zinc finger 47 72 - -
Lja5g2746 186 Pfam C2H2-type zinc finger 93 116 - -
Lja5g2746 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Lja5g2746 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Lja5g2746 186 SMART c2h2final6 47 69 IPR013087 -
Lja5g2746 186 SMART c2h2final6 93 115 IPR013087 -
Lja5g2746 186 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 9 180 - -
Lja5g2746 186 PANTHER ZINC FINGER PROTEIN ZAT5 9 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2746 Lja-Chr5 54421940 54422734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2746 9 183 C2H2 Transcription Factor Family AT2G37430 49.462 6.39e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g2746 zf-C2H2_6 1.4e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2746 - - lja:Lj5g3v0614980.1 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0922 1 9084707 9085703 Lja5g2746 5 54421940 54422734 PCT