Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2740 ATGGGTAACACCCACCGCAAACACCGTGCTAATTCCGCCCCACACAACACCGTTCCTCCGCCTTATAAATATGGCACAACTCACTCACCGATCATCCCAACCCAAAACCAACCTTCTACTTCCAATTCCAACAACAACAGCAACATGCTCTCTTTGCCTTACGCCCACGTCGACTCCACTCTCCGCGCCCTCGCCGCCAACGCCGAGGGATTCGGCCGCTGCGCCGTTGGTGGACTTCACGGTGCTCTTTATCATGTCACCTCTCTTGCAGATGATGGACCTGGATCACTACGTGACGGTTGTCGGAGAAAAGAACCTTTGTGGATTGTGTTTGAGGTTTCTGGCACTATTAATCTTTCGTCGTACTTGAGCGTGTCGTCGTACAAGACCATTGATGGGAGGGGCAAGAGGATTAAGCTCACGGGAAAAGGTTTGAGGCTGAAGGACTGCCAGCATGTGATCATTTGCAATTTGGAGTTAGAAGGAGGAAGAGGGTCTGATGTTGATGGCATTCAGATAAAGCCTAATTCACAGCACATATGGATAGACCGTTGCAGTCTCAGTGATTTTGATGATGGGCTCATAGATATTACAAGAGAAAGCACAGATATAACTATTTCAAGGTGTCATTTCTCGCGGCATGACAAAACAATACTCATAGGGGCAGATCCCTCTCATGTTGGTGACAGATGCATGAGGGTCACCATTCACCATTGTTTCTTTAATGGGACTCGACAGAGACACCCTCGTGTTAGATATGCTAAAGTACATCTGTACAATAATTACACCAGAGACTGGGGCATATATGCTGTTTGTGCCAGTGTGGAATCCCAGATATTCTCTCAACATAATATCTATGAGGCAGGCCACAAGAAGGTGGCATTTAAGTATCTTCATGAGAAGGCAGCAGATAAGGAAGCAGAAGCAACTGGTTATATAAGGTCTGAAGGAGACTTGTTTCTAAATGGTGCTCAACCAGGGTTACTAACTCAGAATGTTGAGTGTAACATGTTTCACCCCAGTGAATACTATCCCACATGGACAGTGGAACCTCCAAAAGATGATCTAAAACAGGTTCTTCATCACTACACTGGATGGCAATCCGTTGCGAGACCAGCAGATCAAACAGTTTGCGCAGACTAG 1143 0.4654 MGNTHRKHRANSAPHNTVPPPYKYGTTHSPIIPTQNQPSTSNSNNNSNMLSLPYAHVDSTLRALAANAEGFGRCAVGGLHGALYHVTSLADDGPGSLRDGCRRKEPLWIVFEVSGTINLSSYLSVSSYKTIDGRGKRIKLTGKGLRLKDCQHVIICNLELEGGRGSDVDGIQIKPNSQHIWIDRCSLSDFDDGLIDITRESTDITISRCHFSRHDKTILIGADPSHVGDRCMRVTIHHCFFNGTRQRHPRVRYAKVHLYNNYTRDWGIYAVCASVESQIFSQHNIYEAGHKKVAFKYLHEKAADKEAEATGYIRSEGDLFLNGAQPGLLTQNVECNMFHPSEYYPTWTVEPPKDDLKQVLHHYTGWQSVARPADQTVCAD* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2740 380 SUPERFAMILY Pectin lyase-like 67 374 IPR011050 -
Lja5g2740 380 PANTHER PECTATE LYASE 18-RELATED 45 372 IPR045032 GO:0030570
Lja5g2740 380 MobiDBLite consensus disorder prediction 1 47 - -
Lja5g2740 380 PANTHER PECTATE LYASE 45 372 - -
Lja5g2740 380 Gene3D - 53 358 IPR012334 -
Lja5g2740 380 MobiDBLite consensus disorder prediction 28 47 - -
Lja5g2740 380 PRINTS Pollen allergen Amb family signature 67 84 IPR018082 -
Lja5g2740 380 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Lja5g2740 380 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Lja5g2740 380 SMART amb_all 114 292 IPR002022 -
Lja5g2740 380 Pfam Pectate lyase 123 285 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2740 Lja-Chr5 54362679 54365552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2740 89 377 Polysaccharide Lyase AT3G55140 76.125 8.33e-171 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2740 K01728 - gmx:100814368 619.772