Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2728 ATGGAAGAAACCACATCAACAATCATGGCTGCACTCTCCACCCTCACTCCTTCCCAGCTCACAGATCTCACCAACTCAATCCTCTCATCCACCCGCCGCCACCACCTCCGCCTCACCTTCCTCCTCTCCTCCCCAACTCTCTTCTCTCTCACCCTTCATCACCTTCACACTCTCTCCCTCTCCCAAAAGACCCTCCTCATTGCCCGCCACCTCCTCTCTTCCCTCCACCACCTCACCCGCCACCTCCAACCCGCCTCCCCGCCACTGTCCACCGCCATAAGAGAGCGCGAGCTGGACGCCGTCTTACTCCTCCTCCTCTTCTGCGAGACCCACAACCACAATCCAGAAGCCCTCGAAGCACCCTTCTCCGATTGGAGATTGAACCTGAGCAAGCTCTTCTCCGACACGTTGCTTACACTTTCTTCTTCTTATTCCTCTGCACCTGTCATTGGGGCGTGTAAGGGTACAATCTTGATCCCCTTCGTTGAGAGGGTGAGCCGGTGCTGGAGGCTAGTCGGCGCGATGAATTGCGGCGGTGGCGGAGGAGGAGGGAAGGAGTTTGGGGAGGTTGCGGCTTCGGCTGCGGCAGTGGTGGCTCTGCCGGCGGTGGAGGTGGCGGTGGGTGGGAGAGAGTGTGTGATATGCAAAGAGGAGATGCGAGTAGGGAGAGATGTGTGTGAGTTGCCATGTCAGCATTTGTTTCATTGGATGTGCATTTTGCCTTGGCTAGGGAAGAGGAACACGTGTCCTTGCTGCAGGTTCCGGCTACCGTCCGATGATGTGTTCGGGGAGATCCAACGGCTGTGGGAGGTGTTGGTTAAATCAGGTGCAAAAGAATAG 840 0.5702 MEETTSTIMAALSTLTPSQLTDLTNSILSSTRRHHLRLTFLLSSPTLFSLTLHHLHTLSLSQKTLLIARHLLSSLHHLTRHLQPASPPLSTAIRERELDAVLLLLLFCETHNHNPEALEAPFSDWRLNLSKLFSDTLLTLSSSYSSAPVIGACKGTILIPFVERVSRCWRLVGAMNCGGGGGGGKEFGEVAASAAAVVALPAVEVAVGGRECVICKEEMRVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKSGAKE* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2728 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 276 - -
Lja5g2728 279 SUPERFAMILY RING/U-box 208 258 - -
Lja5g2728 279 Pfam Ring finger domain 211 253 IPR001841 -
Lja5g2728 279 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Lja5g2728 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 264 IPR013083 -
Lja5g2728 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 2 276 - -
Lja5g2728 279 SMART ring_2 212 252 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2728 Lja-Chr5 54171662 54173072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2728 2 276 C3H Transcription Factor Family AT5G02750 50.877 2.41e-78 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2728 - - pvu:PHAVU_007G161400g 339.347