Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2726 ATGGTTAGATCCTGTTGGAAACCTTCTGTAGATGGTGATGATGGAGATCATGGAAGTGGAAGTGAGAGTGGGAGAGTTGATGGCTTGCTATGGTACAAGGATTTGGGGAATCATCTTTATGGGGAATTCTCAATGGCTGTGGTTCAAGCCAATAGTTCCTTGGAGGATAGAAGTGAACTTGAGTCTGGTCCCTTGAGTTCCAACCATTTTGGTCCTCAAGGGACCTTTATAGGTGTATATGATGGCCATGGTGGGGCTGAGGCTTCACAATTTGTTAGTGATAATCTTTTCTTCAACCTCAAAAGGCTCGCAGGTGAACACCAAGGCATTTCAGAAAAAGTGATCAGCAAAGCATTTTCAGCAACAGAGGCAGGTTTTCTATCTCTTGTGAAGAAACAGTGGCTAAGTAAGCCACATATAGCATCCACTGGTACTTGTTGTCTTGTGGGGATAATTTGCAATGGCATGCTTTATGTTGCAAATTCTGGTGACTCTAGGGTTGTGTTAGGAAGAGTAGAGAGGGCAACAAGGGAAACATCAGCTGTGCAGTTATCTACAGAACATAATGTTAACCAAGAAACAATAAGAGATGAACTTCAGTCAAAGCACCCCTATGATCCACAAATCGTGGTTATGAGACACAATGTTTGGCGTGTGAAAGGCCTCATACAGGTTTCAAGGTCCATAGGTGATGCATATTTGAAGAAAGCAGAATTCAACAGGGAGCCTCTACCATCAAAGTATAGACTAGCTGAAACATTCTTCAAGCCGATACTTAGTAGTGAGCCATCAATATCGTCACACAAACTCCATCCCGATGATCAATTTCTCATATTTGCATCTGATGGCTTATGGGAGCATCTCAGCAACCAAGAGGCTGTTAACATAGTCACCAACAACTCACCTAATGGAATTGCCAGAAGACTTGTGAAAGCTGCGCTTCGAGAAGCAGCTAGGAAGAGAGAAATGAGATTTGCAGATCTCCAAAAGATTGAACAAGGAGTGAGGAGACACTTCCATGATGACATAACGGTGATTGTTGTGTTTCTAAATCACAAATTTACGGATCATAGCTCTCTCTGGGGTTCTCCACTTTCAATCAAGGGAGGTGGGTCTGCCAATTACTAG 1128 0.4291 MVRSCWKPSVDGDDGDHGSGSESGRVDGLLWYKDLGNHLYGEFSMAVVQANSSLEDRSELESGPLSSNHFGPQGTFIGVYDGHGGAEASQFVSDNLFFNLKRLAGEHQGISEKVISKAFSATEAGFLSLVKKQWLSKPHIASTGTCCLVGIICNGMLYVANSGDSRVVLGRVERATRETSAVQLSTEHNVNQETIRDELQSKHPYDPQIVVMRHNVWRVKGLIQVSRSIGDAYLKKAEFNREPLPSKYRLAETFFKPILSSEPSISSHKLHPDDQFLIFASDGLWEHLSNQEAVNIVTNNSPNGIARRLVKAALREAARKREMRFADLQKIEQGVRRHFHDDITVIVVFLNHKFTDHSSLWGSPLSIKGGGSANY* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2726 375 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 3 373 - -
Lja5g2726 375 SMART PP2C_4 36 348 IPR001932 -
Lja5g2726 375 PANTHER ALPHABET, ISOFORM E-RELATED 3 373 - -
Lja5g2726 375 CDD PP2Cc 40 350 IPR001932 -
Lja5g2726 375 SUPERFAMILY PP2C-like 53 351 IPR036457 -
Lja5g2726 375 MobiDBLite consensus disorder prediction 1 21 - -
Lja5g2726 375 ProSitePatterns PPM-type phosphatase domain signature. 76 84 IPR000222 GO:0043169
Lja5g2726 375 Gene3D - 33 359 IPR036457 -
Lja5g2726 375 Pfam Protein phosphatase 2C 71 319 IPR001932 -
Lja5g2726 375 ProSiteProfiles PPM-type phosphatase domain profile. 39 350 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2726 Lja-Chr5 54108694 54112253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2726 1 371 PP2C-type Phosphatase Gene Family AT3G12620 65.591 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2726 K01102 - lja:Lj5g3v0615580.1 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0901 1 8820054 8823035 Lja5g2726 5 54108694 54112253 PCT