Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2721 ATGACAAGGGGTGGTCAGATGAGTGTTGATGGCGACAGTAAAGAGGCGAGTAATCAGCGTTTACGAGATGGGAAGAAGAAGACCTCGGATGAAGGAGTTGCGGGTGAGGGACGAGGTTTGTGTGAGGGTGATGAAGTGAAATGTAATGGAGTGGCGGAAGAAGTTAAGGTTGGACAAGGGGGGAATGTGGAATCCTCTTCTGTCCAGCAGCCCATGCCCCAGCTACAGCCTCAAGGGGTATGTTGGGAGAGGTTTTTACATATTAGATCTCTTAAGGTCTTGCTTGTGGAGTATGATGACTGTACTCGCTTTATTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGTTATTGAAGCGGCAAATGGATTGCAAGCTTGGAAGATATTGGAGGATTTGACCAATCATATTGATCTTATTTTAACTGAGGTAGCAATGCCTGGCTTATCCGGCATTGGTCTTCTATACAAGATTATGAGCCATAAAACACGGAAAAATATTCCTATAATTATGATGTCATCCCATGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTCTGGCAGCATGTTTGGAGGAGATGTCATAGTTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACTCAGAAGTCTATAAAATCAAAGAGTCTTGAGAAGTCTGATAATAATTCTGGAAGCAATGACGAGGATGATAATGGAAGCACAGACTTGAACAATGGGGATGGCTTGAATAATGGGGATGGAAGTGACAATGGTAGCGGTACTCAGAGTTCCTGGACCAAACGAGCTGTAGAAGTGGACAGTCCTAAACCAGTCTCCGAGTGGGATAAAATAACTGAGGGCCCTGATAGCACATGTGCTCAAGTGGTTCACTCCAATGCTGAAATATGTGAGGACAAGATGGTTCCTATGGCCACAAAAGAGTATCCAGAGCAGGAGGAACAACATGTCAAAACTGCAGGTTCAAAACATAGCAATGCCCTTGATGTAGCCCCCCCTAAATTCAATGAGCAAATTTATAGAGGACAACTGGATCTTAATTGTGAGAATCAGTCTAGCAAGCTAAGGTGCAAAGGTCTTTCATTGTCTGATGCCATTACTAGCACTTCTGATTCTCAGATGCATGGCGCAAAATTTGAAGCCCTAAATAGAAGACCCAAGTCCTCAGACATTGAAAATAAAGGTACTAATGATGATGAAGAATTTCCATCTCTTGAGCTCAGTTTAAAGAGGCTAAGAGGAGTTAATGATGCTGGGATTACAATTCAAGACGAACGGATTGTTTTAAGACGTTCTGATCAATCTGCTTTCTCAAGATACAATGCAGCCTCTAATACTAAGAAGTCTCCCACCGGATGTGTTGGAAGCAATTCACCTCATAATAATAGCTTAGAAATCACGAAGAAAGATTCATCTCGTGACATTCAATCCCATTCTAGCGGCAATCCTCCTAATCAGAACTCAAATGTCGCCAGCAATAACATCGATATGGGTTCCACTACTAATAATGCTTTTACTAAATCTGCAGTTAAAAGTGAGCCAGGAGTGGCATCAGAAACTAAATGTTTGTACCAAACATCTGCTTTCCAGCCTCTAAAGAACAACCTTATTTGTGCCTCTCAACGAGTTATCGTACATAATACTGAAGATACAACAACACCAATGGTGGCACCGCTTAAAGTAGATACTCATAAGGATTCTGCAACTCAGGACTTCCATTTCCGTCATGAAAACCATAACTGTATTGCTAATAGCGTACAGCACCAGCTGCCACCTGATCATGATGCTGAATCTTTAAAGAAAATGGCTGTTACTGCTCCGCATTGTGGGTCATCAAATGTGGTAGTTGAAGGTAATATTGGAAATTGCAGTATCAATAGAAGTGGTTCAGGAAGCAACAATGGAAGCAATGGACCAAATGGGAGTAGCAAAGCAGCTAATGCTGGGGGGACAAACGTAGGAAGCAACAATGGACTCACTGGGAATAGTGGCAGTGGTGATGCTAGTGGGAGTGGAAGTGCCAACAGAGTAGATCAAAACAAGGCTTCTCAAAGGCAGGCAGCCCTAACTAAATTTCGCCAGAAGAGAAAGGAGAGAGAGGAGAGATGCTTTCATAAAAAGGTTCGATATCAGAGCAGAAAGAGATTAGCTGAACAACGACCTCGATTCCGCGGACAATTTGTTCGACAGTCCTCAAACGAAAATGCAAGTGGGGCAACAGATAGCTGA 2286 0.4278 MTRGGQMSVDGDSKEASNQRLRDGKKKTSDEGVAGEGRGLCEGDEVKCNGVAEEVKVGQGGNVESSSVQQPMPQLQPQGVCWERFLHIRSLKVLLVEYDDCTRFIVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDLILTEVAMPGLSGIGLLYKIMSHKTRKNIPIIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSIKSKSLEKSDNNSGSNDEDDNGSTDLNNGDGLNNGDGSDNGSGTQSSWTKRAVEVDSPKPVSEWDKITEGPDSTCAQVVHSNAEICEDKMVPMATKEYPEQEEQHVKTAGSKHSNALDVAPPKFNEQIYRGQLDLNCENQSSKLRCKGLSLSDAITSTSDSQMHGAKFEALNRRPKSSDIENKGTNDDEEFPSLELSLKRLRGVNDAGITIQDERIVLRRSDQSAFSRYNAASNTKKSPTGCVGSNSPHNNSLEITKKDSSRDIQSHSSGNPPNQNSNVASNNIDMGSTTNNAFTKSAVKSEPGVASETKCLYQTSAFQPLKNNLICASQRVIVHNTEDTTTPMVAPLKVDTHKDSATQDFHFRHENHNCIANSVQHQLPPDHDAESLKKMAVTAPHCGSSNVVVEGNIGNCSINRSGSGSNNGSNGPNGSSKAANAGGTNVGSNNGLTGNSGSGDASGSGSANRVDQNKASQRQAALTKFRQKRKEREERCFHKKVRYQSRKRLAEQRPRFRGQFVRQSSNENASGATDS* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2721 761 Pfam Response regulator receiver domain 93 204 IPR001789 GO:0000160
Lja5g2721 761 ProSiteProfiles Response regulatory domain profile. 92 210 IPR001789 GO:0000160
Lja5g2721 761 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 737 IPR045279 GO:0009736
Lja5g2721 761 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 32 737 - -
Lja5g2721 761 MobiDBLite consensus disorder prediction 246 282 - -
Lja5g2721 761 MobiDBLite consensus disorder prediction 1 42 - -
Lja5g2721 761 MobiDBLite consensus disorder prediction 401 421 - -
Lja5g2721 761 MobiDBLite consensus disorder prediction 495 519 - -
Lja5g2721 761 MobiDBLite consensus disorder prediction 215 232 - -
Lja5g2721 761 Pfam CCT motif 704 749 IPR010402 GO:0005515
Lja5g2721 761 MobiDBLite consensus disorder prediction 731 761 - -
Lja5g2721 761 CDD psREC_PRR 93 196 - -
Lja5g2721 761 SUPERFAMILY CheY-like 89 215 IPR011006 -
Lja5g2721 761 MobiDBLite consensus disorder prediction 649 705 - -
Lja5g2721 761 MobiDBLite consensus disorder prediction 459 484 - -
Lja5g2721 761 MobiDBLite consensus disorder prediction 744 761 - -
Lja5g2721 761 SMART REC_2 91 206 IPR001789 GO:0000160
Lja5g2721 761 MobiDBLite consensus disorder prediction 459 519 - -
Lja5g2721 761 MobiDBLite consensus disorder prediction 15 42 - -
Lja5g2721 761 Gene3D - 90 245 - -
Lja5g2721 761 ProSiteProfiles CCT domain profile. 707 749 IPR010402 GO:0005515
Lja5g2721 761 MobiDBLite consensus disorder prediction 215 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2721 Lja-Chr5 54023169 54031521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2721 167 751 Response Regulator Gene Family AT5G02810 45.891 3.00e-115 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lja5g2721 Response_reg 8.9e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2721 K12129 - gmx:100796933 1123.61