Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2716 ATGCCTCCTAAACAATCAAAAGCTGAGGTAGCGAAGAAGCAGAAGGTTGTGGAGGACAAAACCTTCGGTCTCAAGAACAAGAACAAGAGCAAAGCGGTTCAGAAATATGTCCAGAATCTCAAGTCATCCGTGCAGCCCAAAACCGATCCCAAAATCGAAGCCAAGAAAAAGAAGGAGGAGGAGAAGGCCAAGGAGAAGGAGCTAAATGATTTGTTCAAAATCGCTGTTAGTCAGCCTAAAGTGCCAGTTGGTGTTGATCCGAAGTCCATATTATGTGAGTTTTTTAAAGTGGGACAGTGTGCCAAGGGCTTCAAGTGCAAGTTCTCTCATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATATACAGCGATCAGCGTGATGACGAGGACACTATGGAGGATTGGGATCAAGCCACCTTGGAGAAGGTGGTGGAGTCAAAGAAAAACGAGTTTAATCAGAACAAACAAACTGACATAGTCTGTAAATACTTTTTGGATGCGGTAGAGAAGAAGCAATATGGTTGGTTTTGGGAATGTCCCAATGGTGGTAAGAATTGCCACTATAGACATGCACTCCCTCCTGGATATGTTTTAAAATCTCAAATGAAGGCTTTGTTAGATGAAGAATCTGAAAAAATATCAATTGAAGAGGAGATTGAAAATCAGCGCGCCAAAGTGGCCACTACAACTCCTATGACTACTGAGTTATTCTTTCAATGGAGGAAGAAGAAGACAGAAGAGAGAGATGCTAAATTGGCTTCACAACAGGCAGAGAGGGCTAAGAATGACCGAATGAGCGGTCGTGAGCTATTTTTGTCAGATGCTAGCTTGTTTGTGGATGATGATGAAGCATATGACCAGTACCAAAGAGAACCTGAAACTGAACAGAAAGCTGCTGAAGAAGGTCCTAGCTCCTCGGCAGCAGCTGGTGCTGATGCTGAAGTTCCTGATCCTGATGACGATGATGATGAATTGGACCTTGATGAGCTGAATGAACTGGAAGCAAGCTTATCCAAGACATCAATCCAAATAAAGGAATAA 1047 0.4288 MPPKQSKAEVAKKQKVVEDKTFGLKNKNKSKAVQKYVQNLKSSVQPKTDPKIEAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDQRDDEDTMEDWDQATLEKVVESKKNEFNQNKQTDIVCKYFLDAVEKKQYGWFWECPNGGKNCHYRHALPPGYVLKSQMKALLDEESEKISIEEEIENQRAKVATTTPMTTELFFQWRKKKTEERDAKLASQQAERAKNDRMSGRELFLSDASLFVDDDEAYDQYQREPETEQKAAEEGPSSSAAAGADAEVPDPDDDDDELDLDELNELEASLSKTSIQIKE* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2716 348 Coils Coil 332 348 - -
Lja5g2716 348 Gene3D - 85 202 - -
Lja5g2716 348 SUPERFAMILY CCCH zinc finger 86 111 IPR036855 GO:0046872
Lja5g2716 348 MobiDBLite consensus disorder prediction 284 329 - -
Lja5g2716 348 Coils Coil 207 227 - -
Lja5g2716 348 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Lja5g2716 348 MobiDBLite consensus disorder prediction 38 63 - -
Lja5g2716 348 Gene3D - 203 278 - -
Lja5g2716 348 Pfam DRG Family Regulatory Proteins, Tma46 214 293 IPR032378 -
Lja5g2716 348 MobiDBLite consensus disorder prediction 48 63 - -
Lja5g2716 348 Coils Coil 51 71 - -
Lja5g2716 348 ProSiteProfiles Zinc finger C3H1-type profile. 157 195 IPR000571 GO:0046872
Lja5g2716 348 MobiDBLite consensus disorder prediction 285 300 - -
Lja5g2716 348 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 348 - -
Lja5g2716 348 Coils Coil 245 265 - -
Lja5g2716 348 SMART c3hfinal6 159 194 IPR000571 GO:0046872
Lja5g2716 348 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Lja5g2716 348 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 348 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja5g2716 DFRP_C 2.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2716 - - lja:Lj5g3v0615780.1 570.081