Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2714 ATGAATTCCAACAACACTTCGAATTCTTCTTCTTCTCAGTCAATGGCAGCAGCAGCAGCAGATGGCTCTTCTTCTTCTGGCAAGAAGATCAGAAAGCCTTACACCATTACCAAGTCCAGGGAAAGCTGGACTGATGAAGAACATGACAAGTTTCTTGAAGCTCTTCAACTGTTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACGGTTATTCAGATTCGAAGCCATGCCCAAAAATACTTCTTGAAGGTTCAAAAAAATGGGACAGTAGCTCATGTGCCTCCTCCGCGTCCTAAGCGCAAAGCAGCTCATCCTTACCCACAAAAGGCATCCAAAAATGGTCTGCTTCTATTTGAGATGGTGATATTCTGTCCTTCAAAACCCGAGATTTCATGCATCCCTAACATACTTCATTCTGGGTTGCCAGTTTTGATGCCGCTTATACCAGCATCCATTGCTTATGCTTCTTCCGCAAATACCCTTCCACCTGGATATGCCACATGGGATGAAACTTCTATACTCATGAATGCTGGATCCAATAAATCCATGACCTATCAGGATGAGCTCAACAAAGCTGATATTGGATCAAAGGGGATAATACAAATTAGCAACAGCAGTCTTAGTGGTGTTGGAAACTCTACTAGAAGGACACCGTCGTCTGAGATACCAAAGCAAGGGAAGCAACCTCTGGTGCTTCATGGTTTGCCAGACTTTGCTGAAGTTTACAGTTTCATTGGAAGTGTTTTTGATCCAGATACAAACGGTCATGTCCAGAAGTTGCAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAATCTCACTGTTAATTTGTCTAGTCCTGACTTTGAGCCCATTAAAGAGGTAATGTCAACATATGATGTCAATACCGTAGGAGTTACTGAAGTCAAGAAGCAGACAACTGATGTGTCATGTCAAAGTGCTTAA 972 0.4156 MNSNNTSNSSSSQSMAAAAADGSSSSGKKIRKPYTITKSRESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNGLLLFEMVIFCPSKPEISCIPNILHSGLPVLMPLIPASIAYASSANTLPPGYATWDETSILMNAGSNKSMTYQDELNKADIGSKGIIQISNSSLSGVGNSTRRTPSSEIPKQGKQPLVLHGLPDFAEVYSFIGSVFDPDTNGHVQKLQEMDPINFETVLLLMRNLTVNLSSPDFEPIKEVMSTYDVNTVGVTEVKKQTTDVSCQSA* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2714 323 ProSiteProfiles SANT domain profile. 38 91 IPR017884 -
Lja5g2714 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 89 IPR017930 -
Lja5g2714 323 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Lja5g2714 323 SMART sant 39 87 IPR001005 -
Lja5g2714 323 Pfam Myb-like DNA-binding domain 40 85 IPR001005 -
Lja5g2714 323 MobiDBLite consensus disorder prediction 210 229 - -
Lja5g2714 323 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 38 87 IPR006447 GO:0003677
Lja5g2714 323 ProSiteProfiles Myb-like domain profile. 35 85 IPR001005 -
Lja5g2714 323 PANTHER PROTEIN REVEILLE 8 7 313 - -
Lja5g2714 323 MobiDBLite consensus disorder prediction 210 228 - -
Lja5g2714 323 Gene3D - 43 90 - -
Lja5g2714 323 MobiDBLite consensus disorder prediction 1 21 - -
Lja5g2714 323 CDD SANT 42 85 IPR001005 -
Lja5g2714 323 PANTHER SWI/SNF COMPLEX-RELATED 7 313 - -
Lja5g2714 323 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2714 Lja-Chr5 53925910 53931227 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja5g2714 Myb_DNA-binding 2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2714 - - gmx:100797466 434.491