Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2713 ATGGTCCTATCAGTCACAACCAACACACAAACCCTAGTTGCTCCCCCCTCACCCTCCTCCTCCTCCTCCATTTCAATGGCCGCAGCTCGTCCCCTTGTCACCGTGCAAGCCCTGGAGGGCGACATGGTTGCCGACGCTGCCTCAACCATTCCCATCCCCGATGTCATGAGGGCCTCCATCCGTCCTGACATCGTCAATTTCGTCCATTCCAACATCTCCAAAAACAGCCGCCAGCCTTACGCCGTCTCCCGCCGCGCCGGCCACCAGACCTCCGCCGAGTCCTGGGGAACTGGTCGCGCCGTCTCCCGTATCCCCCGTGTTCCTGGTGGTGGTACCCACCGTGCTGGCCAGGGAGCCTTCGGAAACATGTGCCGTGGTGGTCGCATGTTCGCTCCCACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTGAACCAGAAGCGCCATGCTCTGGTCTCCGCCATCGCCGCCTCCGCCGTTCCTTCACTTGTCCTCGCCCGCGGCCACCGCATCGAGACCGTCCCGGAGTTTCCCCTTGTCGTCAGCGATTCCGCTGAGGGTGTGGAGAAATCCAAGGAGGCTATCAAGGTTCTCAAGCAGATCGGTGCTTTCCCTGATGCTGAGAAGGCCAAGGACAGCACTGGCATTCGCCCTGGTAAGGGGAAGATGCGCAACCGTCGCTACATTTCTCGTAGGGGTCCTCTTGTTGTGTACGGTACCGAAGGCGCGAAAGCGGTGAAGGCTTTCCGCAACATTCCTGGTGTTGAGGTTGCCAATGTGGAGAGGCTCAACCTTTTGAAGCTCGCACCTGGTGGGCACCTTGGGAGGTTCGTGATTTGGACCAAGTCTGCATTCGAGAAGCTCGATTCGATTTATGGGTCATTCGATAAGCCTTCGGAGAAGAAGAAGGGTTACTTGCTTCCAAGGTCCAAGATGGTGAACTCTGATCTTGCTAGGATTATCAACTCTGATGAGGTTCAGAGTGTTGTCAGGCCGATCAAGAAGGATGTGAAGCGTGCTACCCTGAAGAAGAACCCACTGAAGAACCTCAATGTGATGCTGAGGCTCAACCCCTATGCTAAGACTGCTAAGAGGGCGGCTCTGCTTGCTGAGGCTCAGCGCCTTCAGGCTAAGAAGGAGAAGCTCGATAAGAAGAGGAAGATCGTCTCTAAGGAGGAAGCTTCTGCCATCAAGGCTGCAGGAAAAGCTTGGTATCACACCATGGTGTCAGACTCAGATTATACCGAATTCGACAACTTCTCTAAGTGGTTGGGTGTGTCACAGTGA 1290 0.5612 MVLSVTTNTQTLVAPPSPSSSSSISMAAARPLVTVQALEGDMVADAASTIPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRHALVSAIAASAVPSLVLARGHRIETVPEFPLVVSDSAEGVEKSKEAIKVLKQIGAFPDAEKAKDSTGIRPGKGKMRNRRYISRRGPLVVYGTEGAKAVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLARIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRAALLAEAQRLQAKKEKLDKKRKIVSKEEASAIKAAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2713 429 Coils Coil 366 393 - -
Lja5g2713 429 MobiDBLite consensus disorder prediction 1 24 - -
Lja5g2713 429 ProSitePatterns Ribosomal protein L1e signature. 144 170 IPR013000 -
Lja5g2713 429 Pfam Ribosomal protein L4/L1 family 51 290 IPR002136 GO:0003735|GO:0005840|GO:0006412
Lja5g2713 429 Gene3D - 27 332 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lja5g2713 429 PANTHER BNAC03G35890D PROTEIN 17 429 - -
Lja5g2713 429 MobiDBLite consensus disorder prediction 78 118 - -
Lja5g2713 429 SUPERFAMILY Ribosomal protein L4 46 291 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lja5g2713 429 Pfam 60S ribosomal protein L4 C-terminal domain 304 376 IPR025755 -
Lja5g2713 429 PANTHER 60S RIBOSOMAL PROTEIN L4 17 429 IPR045240 -
Lja5g2713 429 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2713 Lja-Chr5 53921622 53924063 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2713 24 429 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.512 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2713 K02930 - gmx:100779764 746.117