Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2704 ATGGCCGATGCTCCGGCGAGTCCTCCCGACGAGAGCGGCGACCACAGCCCCCGCTCCAGCTTCCGTGAGCAGGATCGTTTCCTTCCTGTTGCTAACATCAGCCGCATCATGAAGAAGGGACTTCCTGCTAATGGCAAAATCGCTAAGGACGCCAAGGAGACTGTCCAGGAGTGTGTCTCTGAGTTCATCAGCTTCGTCACCAGCGAGGCGAGTGATAAATGCCAGAGAGAGAAGAGGAAGACTATCAACGGCGACGATTTGCTCTGGGCAATGGCCACTCTGGGTTTTGAAGAGTACATTGATCCACTCAAGCTTTACCTAGCTGCATACAGAGAGATTGAGGGTGATTCCAAAGGTTCGGCTAAGGGTGGAGATGCATCTGGTAAGAAAGATTATCATCCGGGTCCTGATGCCCAGCTTGCTCATCAAGGTTCTTACTCACAAGTTGTTAATTACCCTAATTCTCAGGCTCAGCATATGATGTTTCCTATGCAAGGCCCAGAGTAG 507 0.5128 MADAPASPPDESGDHSPRSSFREQDRFLPVANISRIMKKGLPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEEYIDPLKLYLAAYREIEGDSKGSAKGGDASGKKDYHPGPDAQLAHQGSYSQVVNYPNSQAQHMMFPMQGPE* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2704 168 MobiDBLite consensus disorder prediction 1 24 - -
Lja5g2704 168 MobiDBLite consensus disorder prediction 116 149 - -
Lja5g2704 168 PANTHER BNAA04G21250D PROTEIN 8 160 - -
Lja5g2704 168 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 160 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lja5g2704 168 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Lja5g2704 168 MobiDBLite consensus disorder prediction 116 136 - -
Lja5g2704 168 Gene3D Histone, subunit A 14 158 IPR009072 GO:0046982
Lja5g2704 168 SUPERFAMILY Histone-fold 24 129 IPR009072 GO:0046982
Lja5g2704 168 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lja5g2704 168 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Lja5g2704 168 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Lja5g2704 168 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2704 Lja-Chr5 53701054 53705269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2704 1 168 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.832 1.00e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja5g2704 CBFD_NFYB_HMF 7.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2704 K08065 - gmx:100820170 277.33