Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2684 ATGGCTGACGACGTGGGAAATGGGATTAACGATTCTGGTTCAAAAGGGATCAACCCAGGATTAATTGTCCTCCTTGTTGTTGCTGGGTTAGTGTTGGTATTTCTTGTTGGAAATTATGTACTCTACATATATGCACAGAAGACCCTCCCTCCTAGAAAAAAGAAGCCGATCTCAAAGAAGAAGATGAAGAAGGAGAAGCTGAAGCAAGGCATCTCTGCACCTGGAGAGTAG 231 0.4372 MADDVGNGINDSGSKGINPGLIVLLVVAGLVLVFLVGNYVLYIYAQKTLPPRKKKPISKKKMKKEKLKQGISAPGE* 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2684 76 Pfam DNA binding protein S1FA 13 76 IPR006779 GO:0003677|GO:0005634|GO:0006355
Lja5g2684 76 PANTHER DNA-BINDING PROTEIN S1FA2 5 76 IPR006779 GO:0003677|GO:0005634|GO:0006355
Lja5g2684 76 MobiDBLite consensus disorder prediction 51 76 - -
Lja5g2684 76 PANTHER DNA-BINDING PROTEIN S1FA1-RELATED 5 76 - -
Lja5g2684 76 MobiDBLite consensus disorder prediction 52 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2684 Lja-Chr5 53471579 53473545 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF S1Fa-like Lja5g2684 S1FA 8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2684 - - lja:Lj5g3v0626660.1 110.538