Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2682 ATGGCTTCCCAGCAAAACCCACTGGACGAAGAAGAAAACTCAAAGCGAAACTGGTCCCTCAAAGACTTCGAGATCGGTAAACCTCTCGGGAGAGGCAAATTCGGCAGAGTCTACGTCGCCAGAGAAATCAAGAACAAATATGTGGTTGCATTGAAGGTTATTTTCAAGGAACAAATTGAGAAGTACAAAATTCACCATCAACTGAGGAGGGAAATGGAGATTCAGAGCAATCTTCACCACCCCAACATTCTCCGTCTCTATGGCTGGTTCCACGATGCGGACCGCGTTTTCTTGATTCTTGAGTATGCTCACAATGGTGAGCTTTATAAGGAGTTGAGGAAAAAAGGGTATCTCACTGAGAAGCAAGCTGCCACGTATATTCTGAGCCTCACAAAGGCCTTGGCTTATTGTCATGAGAAGACTGTCATTCATAGGGATATCAAGCCTGAAAATTTGTTACTTGACCATCAGGGTCGTCTTAAAATTGCGGATTTCGGTTGGTCTGTACAGTCTAGTAGCAAAAGACGTACCATGTGTGGAACATTGGATTATTTAGCACCAGAAATGGTTGAAAACAAAGCTCATGACTACGCAGTTGATAATTGGACTCTGGGTATCCTTTGTTATGAGTTCCTCTATGGTGTTCCTCCATTTGAGGCTGAGAGTCAAATTGATACCTTCAGAAGGATAAGGAACGTGGACCTAAGCTTCCCTTCTACCCCTTCTATTTCTTCTGATGCCAAAAATCTGATTAGTCGGCTCTTGGTGAAAGACTCCTCGCGTAGGCTCTCTCTTGAAAAGATAATTGAACATCCTTGGATAATCAAGAATGCAAATCCGATGGGTATCTGCCTTTAG 858 0.4336 MASQQNPLDEEENSKRNWSLKDFEIGKPLGRGKFGRVYVAREIKNKYVVALKVIFKEQIEKYKIHHQLRREMEIQSNLHHPNILRLYGWFHDADRVFLILEYAHNGELYKELRKKGYLTEKQAATYILSLTKALAYCHEKTVIHRDIKPENLLLDHQGRLKIADFGWSVQSSSKRRTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLYGVPPFEAESQIDTFRRIRNVDLSFPSTPSISSDAKNLISRLLVKDSSRRLSLEKIIEHPWIIKNANPMGICL* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2682 285 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 6 283 IPR030616 GO:0004672
Lja5g2682 285 ProSitePatterns Protein kinases ATP-binding region signature. 29 56 IPR017441 GO:0005524
Lja5g2682 285 ProSiteProfiles Protein kinase domain profile. 23 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2682 285 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Lja5g2682 285 SUPERFAMILY Protein kinase-like (PK-like) 16 278 IPR011009 -
Lja5g2682 285 PIRSF ILK 2 278 - -
Lja5g2682 285 CDD STKc_Aurora 22 274 - -
Lja5g2682 285 Pfam Protein kinase domain 23 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2682 285 SMART serkin_6 23 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2682 285 Gene3D Phosphorylase Kinase; domain 1 11 106 - -
Lja5g2682 285 Gene3D Transferase(Phosphotransferase) domain 1 107 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2682 Lja-Chr5 53461618 53464642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2682 4 279 CBL-interacting serine-threonine protein kinases AT5G25110 38.298 1.81e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Lja5g2682 Pkinase 9.8e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2682 K08850 - gmx:100800111 510.76