Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2681 ATGAGCGTCATCGACCTTCTAACCAGAGTTGACACCATTTGCAACAAGTACGACAAATACGACGTCGAACGCCACCGTGAATCCAACCTCTCCGGCGACGATGCATTTGCCAGACTCTACGCCACCGTCGACGCCGACATCGAGGCACTCAATCAGAAAGCTGAAACTGCTTCTAAGGAGAAAGGTAAGGCTTCTGCTGTAGCGATCAATGCGGAGATTCGTCGAACCAAGGCTAGGTTGCTTGAAGAAGTTCCCAAGTTGCAGAAATTGGCTGTCAAAAAGGTAAAGGGGCTTTCATCGCAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCGGAGAGAATCCAAGCTATCCCAGATGGGACTCCTGCTGCGCCAAAACAAACTGGAGGCTGGGCATCTTCGGGCTCACGTCCGGATATTAAGTTTGATTCTGATGGGCGATTTGATGACGAATACTTCCAACAAACTGAGGAATCAAGTCGATTCAGGAACGAATATGAAATGCGTAGAATAAAACAGGATCAAGGTTTGGATGTGATTGCAGAAGGGTTGGATACATTGAAAGACATGGCACATGATATGAATGAGGAACTGGATAGACAAGTTCCACTGATGGATGAGATTGACACTAAGGTGGACCAGGCAGCATCTGACCTTAAGAATACCAATGTTAGACTTAAAGACACAGTTATCCAGCTTCGGTCCAGTCGAAATTTCTGCATCGATATTGTTTTGTTGATTATAATTCTGGGAATTGCTGCCTACTTATACAATGTATTAAAGAAATGA 798 0.4499 MSVIDLLTRVDTICNKYDKYDVERHRESNLSGDDAFARLYATVDADIEALNQKAETASKEKGKASAVAINAEIRRTKARLLEEVPKLQKLAVKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPAAPKQTGGWASSGSRPDIKFDSDGRFDDEYFQQTEESSRFRNEYEMRRIKQDQGLDVIAEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDQAASDLKNTNVRLKDTVIQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2681 265 CDD SNARE_Qc 175 230 - -
Lja5g2681 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lja5g2681 265 MobiDBLite consensus disorder prediction 121 148 - -
Lja5g2681 265 Pfam SNARE domain 207 256 IPR000727 -
Lja5g2681 265 Gene3D - 177 241 - -
Lja5g2681 265 SMART tSNARE_6 166 232 IPR000727 -
Lja5g2681 265 Coils Coil 40 60 - -
Lja5g2681 265 SUPERFAMILY SNARE fusion complex 166 230 - -
Lja5g2681 265 PANTHER SYNTAXIN-73 1 261 - -
Lja5g2681 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Lja5g2681 265 PANTHER SYNTAXIN 1 261 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2681 Lja-Chr5 53452534 53458017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2681 1 264 SNARE and Associated Proteins AT3G09740 75.940 2.03e-151 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2681 K08506 - gmx:100819272 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2681 5 53452534 53458017 Lja5g2681 5 53452534 53458017 ECH