Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2680 ATGCAAATGATCCCAGGTGACCCCTTTTCATTATCCACTCCACTCGGAGGGTTTAGCACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAATGCTCCGACCACCACCAAGAAGAAGAGAAACCTGCCCGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTCTCCCCAAAGACCCTCATGGCGACGAACCGCTTCGTCTGTGAAATATGCAACAAAGGCTTCCAGAGAGACCAGAATCTCCAGCTCCACAGAAGAGGCCACAACCTCCCATGGAAGCTCCGGCAGAGATCCAACAAGGAGGTTCGTAAAAAGGTCTACATCTGCCCGGAGAAGACCTGCGTCCACCACGACGCGTCGCGAGCACTCGGCGACCTCACCGGCATCAAGAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCTCACACCAAAACATGCGGCACCAGGGAGTACAAGTGTGACTGTGGCACCCTCTTCTCCAGAAAGGATAGCTTCATAACACATAGAGCTTTCTGTGATGCGTTGGCGGAAGAGAGTGCTAGGCTAACCTCAGTTACTTCTTCTACAAATCTGAATTTCAAGGATGAAGATTGTATTTCTTTGATTCCAAAAAATTTTGATGGCAGCATTCCGCAGTTTGGCCCACACGGGTTTCGCCTGGATTTCAACCACAACAATAACTCTTTGATGGGTGCTGGTGACCAACACCAACATATTAGGCCGAGTTTGTCGCTGTGGTTGAACCAGGCAAACCCTCCTCCTCATCATCCTCACGATGTGGGAGGGATTTTCGTGTCGTCGTCATTGGGTTTGCCTGAGATTGTGCAAATGCAACAACCACAGGTTCACAATAATGGCATGATTGGGTCTTCATCAATGTTGCCTAATTTTGTTCCTGGTTCGAATTCAAACACTGCAAGCCTTTCACTTTCTGAGGGTCAAAATAAGCAATCAAATTCATCAAAACCTGCTTCTCCTATGTCAGCAACTGCCCTTCTTCAGAAGGCAGCTCAAATGGGATCCACTAGAAGCTCCAACAACCCTTCCATTTTCAGTGGTAGTTTTGGGGTGATGACCTCATCACCTAACTCCTCTCAAACTACCACTACTCTCAACAATAATAGCCATAATGGTAATGAGATTAACCAGGTTTTTCAGGCCATGAAGCAACCACAGGATTTTACTTCAAATGGAGGTGAAGCCATAATGGGGAATAGTGCCAGTTTCAGCTCAATGGCGCATTCATCAAACGCTTATGATCAACTTGTGATGCAAAACAATGGGAAAATGAAGCTCCACCTTTCAAACGCTGCGGATCATAATTTGACAAGAGATTTTCTTGGCGTGAGTGGAGGAGGAGCTGGTCCTCAATTCCTACCTCAAGAGCTAGCAAAGTTTTTGCATCCATAG 1467 0.4703 MQMIPGDPFSLSTPLGGFSTQEQNTNPNPKPNAPTTTKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDASRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTSSTNLNFKDEDCISLIPKNFDGSIPQFGPHGFRLDFNHNNNSLMGAGDQHQHIRPSLSLWLNQANPPPHHPHDVGGIFVSSSLGLPEIVQMQQPQVHNNGMIGSSSMLPNFVPGSNSNTASLSLSEGQNKQSNSSKPASPMSATALLQKAAQMGSTRSSNNPSIFSGSFGVMTSSPNSSQTTTTLNNNSHNGNEINQVFQAMKQPQDFTSNGGEAIMGNSASFSSMAHSSNAYDQLVMQNNGKMKLHLSNAADHNLTRDFLGVSGGGAGPQFLPQELAKFLHP* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2680 488 SUPERFAMILY beta-beta-alpha zinc fingers 66 163 IPR036236 -
Lja5g2680 488 MobiDBLite consensus disorder prediction 13 42 - -
Lja5g2680 488 PANTHER ZINC FINGER PROTEIN JACKDAW 7 485 IPR033243 GO:0003700
Lja5g2680 488 Gene3D Classic Zinc Finger 63 90 - -
Lja5g2680 488 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 485 - -
Lja5g2680 488 Pfam Zinc finger, C2H2 type 67 89 IPR013087 -
Lja5g2680 488 Gene3D Classic Zinc Finger 101 191 - -
Lja5g2680 488 MobiDBLite consensus disorder prediction 306 348 - -
Lja5g2680 488 MobiDBLite consensus disorder prediction 1 50 - -
Lja5g2680 488 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Lja5g2680 488 SMART c2h2final6 108 138 IPR013087 -
Lja5g2680 488 SMART c2h2final6 143 163 IPR013087 -
Lja5g2680 488 SMART c2h2final6 67 89 IPR013087 -
Lja5g2680 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2680 Lja-Chr5 53432819 53435375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2680 1 252 IDZ Gene Family AT5G03150 64.460 6.98e-124 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g2680 zf-C2H2 0.0049 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2680 K25870 - gmx:100812495 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2680 5 53432819 53435375 Lja5g2680 5 53432819 53435375 ECH