Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2679 ATGGCAACTGAAGGTGCAAACTTTTCCAAGGATAATAATAACCAAGGCGCTGGCACCATTGAAGATAAAGTTGATATCCAAATTCAGAAGGATCTAGTGTCACCTGAAATAACTGAGGAACTCACAAGTGGACAATATGAGACAAGGCCTAACATTATATTGGAGATACCTACAATAACTCAAGAGGAAGCAAGAGAAGATTATTTGAGAATAGACATACCTCCAACTCCATCTCCAAGAAGAGTGATATTTCCCCCTTGTCTAAGTCCTGGTTTTTCCAGAGCCAATGAATCTCCTGGTCCTTCCTCATCGAAAAGTAGATCAACAATTAAAACCTTTCTTCCCAAACTCAGCTTTAAATTTCTCAACACAAGTTCAGATATTGAAAAAGCTGCATTCCTAGCACTTGAAGGTTCTGCACCAAAAAAACCTTTTCTTTCAAGGACATTATCTCGTACCAAAACTACCACGTCGTCCTTACCTGGAACACCAATTGCTCATTCACATCCAGGGTCTTTACATGGAGGCAACATGGCTTATCTAGCAACAACTGTTGAGAAAGGAGTGCAATTACCAATTCATCGTTCCCGGTCAGTTCCTTCATTTACAGAAGAAGGTAATACCACACCTGTAGGCGCAAAGTTTCGTGTAATTCCGACCACGCCACGAATCGATGAGAAAATTGCCACAACAACATCTACCAAATCTCCAACTGATGATGCTGTTGAAAATGAGGATGGCGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAACTGGGAGAAGGTGCTAATACTTTTAAATTGGAGTGCAGCTGCAAAGGTGAGCTTTCACTGGCACACCAAGAATGTGCAGTTAAATGGTTTAGGATTAAAGGTAACAGAACATGTGATGTTTGCAAGCAAGAAGTTAAGAACCTACCCGTCACTCTTTTACGAGTTCAAACTGTTCTAGGGAGCAGAGGTCAGCTAGCAGAGACTTCTCAATACAGGGTTTTGCAGGATGCCCCCATTCTTGTCATTGTCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCAAAGATGGGATCTAGTGCTATTGCTATGTCTCTCCCATTTTCTTGTATACTTGGTCTTCTTGCGAGCATGACCGCTACAACAATGGTTTAG 1176 0.4124 MATEGANFSKDNNNQGAGTIEDKVDIQIQKDLVSPEITEELTSGQYETRPNIILEIPTITQEEAREDYLRIDIPPTPSPRRVIFPPCLSPGFSRANESPGPSSSKSRSTIKTFLPKLSFKFLNTSSDIEKAAFLALEGSAPKKPFLSRTLSRTKTTTSSLPGTPIAHSHPGSLHGGNMAYLATTVEKGVQLPIHRSRSVPSFTEEGNTTPVGAKFRVIPTTPRIDEKIATTTSTKSPTDDAVENEDGGEDIPEEEAVCRICMVELGEGANTFKLECSCKGELSLAHQECAVKWFRIKGNRTCDVCKQEVKNLPVTLLRVQTVLGSRGQLAETSQYRVLQDAPILVIVNMLAYFCFLEQLLVSKMGSSAIAMSLPFSCILGLLASMTATTMV* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2679 391 MobiDBLite consensus disorder prediction 150 172 - -
Lja5g2679 391 CDD RING_CH-C4HC3_MARCH 258 306 - -
Lja5g2679 391 MobiDBLite consensus disorder prediction 1 20 - -
Lja5g2679 391 MobiDBLite consensus disorder prediction 150 165 - -
Lja5g2679 391 MobiDBLite consensus disorder prediction 230 249 - -
Lja5g2679 391 ProSiteProfiles Zinc finger RING-CH-type profile. 250 312 IPR011016 GO:0008270
Lja5g2679 391 SMART ringv_2 257 306 IPR011016 GO:0008270
Lja5g2679 391 Pfam RING-variant domain 258 305 IPR011016 GO:0008270
Lja5g2679 391 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 11 391 - -
Lja5g2679 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 314 IPR013083 -
Lja5g2679 391 MobiDBLite consensus disorder prediction 1 22 - -
Lja5g2679 391 SUPERFAMILY RING/U-box 254 309 - -
Lja5g2679 391 MobiDBLite consensus disorder prediction 88 108 - -
Lja5g2679 391 PANTHER OS02G0165000 PROTEIN 11 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2679 Lja-Chr5 53419117 53425332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2679 252 312 C3H Transcription Factor Family AT2G37950 41.935 3.22e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2679 - - lja:Lj5g3v0626850.1 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2679 5 53419117 53425332 Lja5g2679 5 53419117 53425332 ECH