Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2677 ATGGGTAACGTTGGAAGTAGCGGCGCTAACCACCGCCGGAGACACGGCGGAAGCGGAAGCGGCCGAAGGATTCATCCGCCACCTCACCCGCCGGTGGCGCCGCAGCCGGAAATCGCGGCTAATCGGTTTGTGTACCCTGCTGCCGCCACGCCGTATCATAACTACCCAGGTTACTATCCCCCGCCGCCGACAACCGTGCCGGTGCCTTTGCCGGCACCGTATGACCACCATCACCGTCCTCCGATGGACCCAATGTGGGGGTGTTATCAGGCGCCGCTGCCACCTGCGCCGTATGTGGAGCAACGGGAAGCGGTTACTATAAAGAATGATGTCAATGTTAAGAAGGAGACCCTGAAGATTGTGCCTGATGAGGAAAATCCAGGACACTTCCTTGTGTCATTCACTTTTGATGCCACTGTTTCTGGGAGTGTTACCGTACTTTTTTTCGCAAAAGAAGGTGAAGGTTGCATCCTTACCCCAATGAAGGAAAACGTTCTTCCACCCGTGACCGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAACCAGCTGGAACTGGTATCAAATTTTCAGAGTTTGACGAAGCTGAGTTGTTGAAAGTGGGGGACATGGATGTCTATCCTGTAGCAGTTAAAGCAGATGCATCCTCTGGCGACCATGATGGATCAGAAGAAACTCCAGCATCTGGTAACACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAGGTTGTTAAGCAGATTTTGTGGGTGAATGGGATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAATGGAGAGTGACTTGGATGGGAATGACCCAGGAAAAGAGTGTGTTATCTGCTTGTCAGAGCCTCGGGACACAACTGTCCTCCCATGCCGCCATATGTGCATGTGTAGTGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTTAGGCCTGAGCCTACTGAGCCTGAGGAATGA 1050 0.5076 MGNVGSSGANHRRRHGGSGSGRRIHPPPHPPVAPQPEIAANRFVYPAAATPYHNYPGYYPPPPTTVPVPLPAPYDHHHRPPMDPMWGCYQAPLPPAPYVEQREAVTIKNDVNVKKETLKIVPDEENPGHFLVSFTFDATVSGSVTVLFFAKEGEGCILTPMKENVLPPVTVNFQQGLGQKFRQPAGTGIKFSEFDEAELLKVGDMDVYPVAVKADASSGDHDGSEETPASGNTNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGNSMESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVRPEPTEPEE* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2677 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 339 IPR013083 -
Lja5g2677 349 MobiDBLite consensus disorder prediction 1 36 - -
Lja5g2677 349 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 289 329 IPR045195 -
Lja5g2677 349 PANTHER MAHOGUNIN 1 345 IPR045194 GO:0061630
Lja5g2677 349 SMART ring_2 290 328 IPR001841 -
Lja5g2677 349 ProSiteProfiles Zinc finger RING-type profile. 290 329 IPR001841 -
Lja5g2677 349 MobiDBLite consensus disorder prediction 215 235 - -
Lja5g2677 349 Pfam Zinc finger, C3HC4 type (RING finger) 288 334 - -
Lja5g2677 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 345 - -
Lja5g2677 349 SUPERFAMILY RING/U-box 289 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2677 Lja-Chr5 53385542 53392376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2677 95 309 C3H Transcription Factor Family AT3G09770 65.158 5.82e-97 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2677 - - gmx:100789032 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2677 5 53385542 53392376 Lja5g2677 5 53385542 53392376 ECH