Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2676 ATGAAGATTCCCTTTATCAATTGTTTCTCTGCATCATCCATTGAACAAACCAACAATGATATTCAAGAGGAAGAAAATAATGATGGAAGCTTTCGTTTATTCACTTACAATCAATTGAAATCTGCTACTGCTAATTTTAGTGACAAGGTTGGAGAAGGTGGATTTGGCTCTGTCTACAAGGGGAGGCTTAGTGACGGCTCTTTTGTGGCGTTGAAAGTGCTTTCCATTGAGCTAGGATCCATGCGAGGAGAGAAGCAATTTGTGGCAGAATTGGCTACAATGTCAAATATCAAGCACCAAAATCTAGCCACCCTTCGAGGGTATTGTGTAGAAGGAGCACACCGATGCTTGGTCTATGATTACATGGAGAACAACACCCTTCACCACGCTTTCTTAGGTTCAGAGGAGAGAAGGATGAGATTCAACTGGGAAGCAAGGAAGGAAATATCCATAGGTGTGGCTAGGGGGCTTGCTTTTCTCCATGAGGAGGTGAAGCCTCATATTGTTCATAGAGACATCAAAGCCAGAAATATTCTTCTTGATAGGAATTTCACACCAAAAGTTTCAGACTTTGGTTTGGCAAAGTTACTTAGAGATGAAGCATCTTACATCAGGAAATTGAGTTTGCAATTATTGTTATTTGAAAACAGGGGTTATCTAGCTCCAGAGTATGCCAGTTCAGGACAGTTGACAAGAAAATCAGATGTATATAGCTTTGGGGTATTACTTTTGCAAATTGTCAGCGGCCAAGTTGTTGTAGATGCCTATCAAGACAATGAAAGTTTCATTGTAGAGAAGGTGTGGGCAGCTTATGAAGACAACAATCTATTAAAACAAGTGGATCCTGTGCTTAATGTGAACGTTCAAGTGGAAGAGGCTGTAAAATTCCTTAAAGTGGGGTTGCTTTGTGTGCAAGAAAATGCCAAGCTTAGGCCAAGAATGTCAGAGGTTGTTGAGAAGTTGACCAGCAACGTTGATATTATAAAAGATGTTTGCATCACAAAACCAGGGCTTGTTGCTGATCTGAGGAACATTAGAATAAGGGAACAAGTGACATTGAGCTCGCCACAGGAATCAAGTGATGCTGGAGAAAGGTCCATTTGGAGTACGGCTAGTCTTGCTCGTTAA 1128 0.4105 MKIPFINCFSASSIEQTNNDIQEEENNDGSFRLFTYNQLKSATANFSDKVGEGGFGSVYKGRLSDGSFVALKVLSIELGSMRGEKQFVAELATMSNIKHQNLATLRGYCVEGAHRCLVYDYMENNTLHHAFLGSEERRMRFNWEARKEISIGVARGLAFLHEEVKPHIVHRDIKARNILLDRNFTPKVSDFGLAKLLRDEASYIRKLSLQLLLFENRGYLAPEYASSGQLTRKSDVYSFGVLLLQIVSGQVVVDAYQDNESFIVEKVWAAYEDNNLLKQVDPVLNVNVQVEEAVKFLKVGLLCVQENAKLRPRMSEVVEKLTSNVDIIKDVCITKPGLVADLRNIRIREQVTLSSPQESSDAGERSIWSTASLAR* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2676 375 Gene3D Phosphorylase Kinase; domain 1 15 121 - -
Lja5g2676 375 CDD STKc_IRAK 50 322 - -
Lja5g2676 375 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Lja5g2676 375 ProSiteProfiles Protein kinase domain profile. 44 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2676 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Lja5g2676 375 Gene3D Transferase(Phosphotransferase) domain 1 122 333 - -
Lja5g2676 375 MobiDBLite consensus disorder prediction 356 375 - -
Lja5g2676 375 PANTHER RECEPTOR-LIKE KINASE 7 340 - -
Lja5g2676 375 SMART serkin_6 44 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2676 375 SUPERFAMILY Protein kinase-like (PK-like) 23 321 IPR011009 -
Lja5g2676 375 Pfam Protein tyrosine and serine/threonine kinase 46 321 IPR001245 GO:0004672|GO:0006468
Lja5g2676 375 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2676 Lja-Chr5 53372991 53375598 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2676 34 341 Receptor kinase-like Gene Family AT1G56120 45.338 6.40e-81 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja5g2676 PK_Tyr_Ser-Thr 2.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2676 - - lja:Lj5g3v0627010.1 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2676 5 53372991 53375598 Lja5g2676 5 53372991 53375598 ECH