Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2675 ATGATTTCTTTTCTCGCTTGTTTCTCTGCATCAACCACCGAACAAGATTATCCAGAGGAAGAGAGTGATGGAAGCTTTCGTGTGTTCACTTATAACCAATTGAGATCAGCCACTGCTAATTTCAGTGACAAGATTGGAGAAGGTGGTTTTGGCTCTGTCTACAAGGGAAGGCTTAGGGATGGAGCTTTTGTGGCGGTGAAAGTGATTTCAGTTGAGGTAGAATCCATGCGTGGAGAGAGGGAATTTGTGGCGGAATTGGCAACGATGGCGAATATCAAGCACCAAAACCTGGCCATTCTTAGAGGGTGTTGTGTGGAAGGAGCACACAGATATTTGGTCTATGAATACATGGAGAACAAAACCCTCCACCATACTTTCCTAGGTTCTGAGGATAGAAGAATGAAATTCAGCTGGGAAGCAAGGAAAAACATATCCATTGGTGTGGCTAGAGGCTTTGTCTTTCTCCATGAGGAGCTGAGGCCTCATATTGTGCACAGAGACATCAAAGCAGATAATATACTTCTTGATAAGAATTTCACACCAAGAGTTTCAGACTTTGGTCTGGCAAAATTGCTGAGAGATGAAGCATCTTACATCAGTACTAGAGTTGCAGGGACATTGGGTTATCTAGCTCCAGAGTATGCTAGTTCAGGAAAGTTGACAAGAAAATCAGATGTTTATAGCTTTGGGGTATTGCTTTTACAAATTGTCACTGGCCAAGCAGTTGTAGATGCCTATCAAGATGATGAACGTTTCATTGTAGAGAAGGCTTGGACAGCTTATGAAGCCAACAATCTATTTAGTGTGGTGGATCCAGTGCTTGATTCGAGCGTTCCCGTGGAAGAGGCCATAAAATTTCTCAAAGTTGGTTTGCTTTGTGTGCAGCAAAACGCCAAGCTTCGGCCGCGAATGTCAGAGGTTGTAGAGAAGCTGACAGTTAATGTTGATATGAAAGATGTTTCAATTTCAAAACCTGGGTTTGTTGCTGATCTCAGGAACATTAGAATCAAGCAAGAAGTAGCCATGAACTCATTAAGTCCTTCTGGAACATCCTTTGCAAGCTCCATTTGGAGTATGGCCAGTAGTCTTGCTCGTTAA 1098 0.4281 MISFLACFSASTTEQDYPEEESDGSFRVFTYNQLRSATANFSDKIGEGGFGSVYKGRLRDGAFVAVKVISVEVESMRGEREFVAELATMANIKHQNLAILRGCCVEGAHRYLVYEYMENKTLHHTFLGSEDRRMKFSWEARKNISIGVARGFVFLHEELRPHIVHRDIKADNILLDKNFTPRVSDFGLAKLLRDEASYISTRVAGTLGYLAPEYASSGKLTRKSDVYSFGVLLLQIVTGQAVVDAYQDDERFIVEKAWTAYEANNLFSVVDPVLDSSVPVEEAIKFLKVGLLCVQQNAKLRPRMSEVVEKLTVNVDMKDVSISKPGFVADLRNIRIKQEVAMNSLSPSGTSFASSIWSMASSLAR* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2675 365 PANTHER RECEPTOR-LIKE KINASE 7 339 - -
Lja5g2675 365 Gene3D Phosphorylase Kinase; domain 1 11 116 - -
Lja5g2675 365 SMART serkin_6 39 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2675 365 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 339 - -
Lja5g2675 365 ProSiteProfiles Protein kinase domain profile. 39 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2675 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Lja5g2675 365 Pfam Protein kinase domain 42 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2675 365 ProSitePatterns Protein kinases ATP-binding region signature. 45 67 IPR017441 GO:0005524
Lja5g2675 365 CDD STKc_IRAK 45 312 - -
Lja5g2675 365 Gene3D Transferase(Phosphotransferase) domain 1 117 323 - -
Lja5g2675 365 SUPERFAMILY Protein kinase-like (PK-like) 23 311 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2675 Lja-Chr5 53357232 53359471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2675 28 330 Receptor kinase-like Gene Family AT1G56120 47.712 1.27e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja5g2675 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2675 - - gmx:100813945 525.013