Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2673 ATGCAAACTCTTCAGTTTCATAGCCTCTCTCACTTTCTCTATATCCTTGTCCTGTTTCTCATTTTAAGCTCCCGTGGCGCCGAAGCGTTCGGCGCCATGGGACCCATAGCCGCGTCGTTCGGAGAAGACCAGGTCTTCTGCGCGATCGACGCGAGCGGGAAACAGGACGTGATCTGCTTTGGGAAGAACATGACTTCCCCGTCGTCTCTTCCTTCGCCGTCGTCCTACGTCAGCAGTATCCCCGCCATGTCAGCGCTCTCCGGCGGGGAGGGGTTTCTCTGCGGCATCTTAGCGAACACCTCGCAGGCGTTCTGCTGGGGCGCGTCGTCAACGAGGCCGAGTGTGGATCTCGTCCTCGTGCCGCCGGCGTACCGGAGTGTAGCTTACTCCCATATCGCCGCCGGGGAGAGTCACGTCTGCGCCGTCAGCGGATCATACTACGCCGCTGATCACGTTTCCGGGAGGGTTGATTGCTGGGAAATCGCGAAGAATGGTAACAACACCTTGGTGGCGAGGATGAATGGATCGTTTTTGGATCAATCCGTGGCGAATCTGGTTGTGAACCGGGTTGTCTCCGGCGAGGGGTTCACCTGCGGTGAGGTGAGCACCGGCGGGCTGGTTTGCTGGGGTCCCAATTCGGCGAACTTGGGCGTTTCCAACGTGACGGAGAGTTTCACCGCTTTGGCGGCGGGGAGGAACGCCGTTTGCGGCGCTTTCAACTCCACCGGCGAGTTGAAGTGCTGGGGTGATCCGGGTTCGTTTTCGGAAACTCCACCTGATGATGTTCGGTTCGTGTCTCTATCTGCAGGTGGATACCATTTCTGTGGAGTTAGAGAAGATAACCATGGTGTGGAATGTTGGGGTAGTTTGATCAATTCCTCTGCAGTTCCCAAAGGTAATGGGTTTATGGCTATTGCTTCTTCTGAGAAAACTACTTGTGGTGTTAGGGAAGATGATCTTCTTCTCGATTGTTGGGTTGTCAACGCTTCAAGCCCCGATTTCGATCCCCCTTTGGAGCTTTCGAGCCCCGGTTTATGCAGGGAAAGTGCTTGTGGAAATGCTGAGTTTGCTTTCAATGTGAGTGTGCTCAATGAGCAAGATTTGACTAGCTTGTGTGCTAAACAGGATTTGAGGATTTGTTCGCCTTGTGGGTACAACTGTTCAAAAGGTTTCTTCTTGTCTAGTCCTTGTACTCGGAACGCGGATCGTGTTTGCACTGCTTGTTCTCTTTGCCAGAATAGCTCTTGTAGGGAAGTTTGTGGAGGCCATTCTTCTGCTGTGTGGTGGCATTGGCCTCATATCCGTAGATATGTGATCATAATTGGGTCTTCAGTGTTGTGTTTCTTGCTGATTTTGACTTGTGGGTGTTTTCTCACCAAAAGAAAGCAAGAAAAGGGGAAAACAAAGAAACAATCCAAGTCTTGCATAGGGAAACCTGAGAAGGATGATGATGATGATGATGTGAATGTTGGTCTTCACTCTTCTACTTCTGTTGCTTCGTGTCCCGGGGCGCCTCAGGTTTTCAGGCTTTCTGAGCTGAAAGATGCTACCAATGGGTTCAAGGAGTTTAACGAGGTTGGGAGAGGAAAATATGGTTTTGTTTACAAAGCTGCTTTGGCTGATGGGAGAGTGGTTGCTGTTAAGAGAGCAAATGCTGCAACAATAATCCACACCAACAATCGGGACTTCGAAACGGAATTGGAAATTCTGTGCAAGGTTCGCCACTGCAATGTTGTTAACTTGTTGGGTTATTGTGCTGAGATGGGAGAAAGGTTGCTTGTTTATGAGTTCATGCCTCATGGGACACTCTATGATCACCTCCATGGTGGCCTCTCTGCTCTCAATTGGAACCTCAGGCTGAAGATTGTGACGCAGGTCGCGAAGGGTCTTGAGTACCTTCACAAGGAAATATCACCTCCAATTGTTCATAAGGATCTCAAGAGTTCAAACATTCTCTTGGACTCAGAGTGGGGGGCTAGAATTTCAGACTTTGGACTCATTGCTTCAAGTGACAAGGATCTTAACCAGGACCTGAAAAGCGATGTTTACAACTTTGGGATTGTGTTGCTAGAGATTCTAAGTGGAAGGAAGGCTTATGAGAGTGACATTACACCACCCAATGTGGTTGATTGGGCAGTGCCTTTGATCAAACAGGGTAAAGAAGCTACTATAATTGATCGCTATATTGCTCTTCCAAGGAATTTTGAACCTTTGCTTAAGCTTGCTGATATAGCAGAGCTTGCTGTGAGAGAGAATCCAAGTGAGAGGCCACCCATTTCAGAAATAGCATCTTGGTTGGAGCAAATTCTGAAGGATGGATTGATCTTATAG 2331 0.4921 MQTLQFHSLSHFLYILVLFLILSSRGAEAFGAMGPIAASFGEDQVFCAIDASGKQDVICFGKNMTSPSSLPSPSSYVSSIPAMSALSGGEGFLCGILANTSQAFCWGASSTRPSVDLVLVPPAYRSVAYSHIAAGESHVCAVSGSYYAADHVSGRVDCWEIAKNGNNTLVARMNGSFLDQSVANLVVNRVVSGEGFTCGEVSTGGLVCWGPNSANLGVSNVTESFTALAAGRNAVCGAFNSTGELKCWGDPGSFSETPPDDVRFVSLSAGGYHFCGVREDNHGVECWGSLINSSAVPKGNGFMAIASSEKTTCGVREDDLLLDCWVVNASSPDFDPPLELSSPGLCRESACGNAEFAFNVSVLNEQDLTSLCAKQDLRICSPCGYNCSKGFFLSSPCTRNADRVCTACSLCQNSSCREVCGGHSSAVWWHWPHIRRYVIIIGSSVLCFLLILTCGCFLTKRKQEKGKTKKQSKSCIGKPEKDDDDDDVNVGLHSSTSVASCPGAPQVFRLSELKDATNGFKEFNEVGRGKYGFVYKAALADGRVVAVKRANAATIIHTNNRDFETELEILCKVRHCNVVNLLGYCAEMGERLLVYEFMPHGTLYDHLHGGLSALNWNLRLKIVTQVAKGLEYLHKEISPPIVHKDLKSSNILLDSEWGARISDFGLIASSDKDLNQDLKSDVYNFGIVLLEILSGRKAYESDITPPNVVDWAVPLIKQGKEATIIDRYIALPRNFEPLLKLADIAELAVRENPSERPPISEIASWLEQILKDGLIL* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2673 776 ProSitePatterns Protein kinases ATP-binding region signature. 526 548 IPR017441 GO:0005524
Lja5g2673 776 Gene3D Phosphorylase Kinase; domain 1 487 597 - -
Lja5g2673 776 PANTHER OS01G0750732 PROTEIN 33 774 - -
Lja5g2673 776 Gene3D Transferase(Phosphotransferase) domain 1 598 675 - -
Lja5g2673 776 Gene3D Transferase(Phosphotransferase) domain 1 676 773 - -
Lja5g2673 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Lja5g2673 776 Pfam Protein kinase domain 521 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2673 776 ProSiteProfiles Protein kinase domain profile. 520 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2673 776 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR1 33 774 - -
Lja5g2673 776 Gene3D - 83 360 IPR009091 -
Lja5g2673 776 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 350 405 IPR001368 GO:0005515
Lja5g2673 776 SUPERFAMILY Protein kinase-like (PK-like) 496 767 IPR011009 -
Lja5g2673 776 MobiDBLite consensus disorder prediction 469 488 - -
Lja5g2673 776 SUPERFAMILY RCC1/BLIP-II 42 292 IPR009091 -
Lja5g2673 776 SMART serkin_6 520 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2673 Lja-Chr5 53316959 53319891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2673 14 770 Receptor kinase-like Gene Family AT3G59420 31.387 6.95e-111 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lja5g2673 Pkinase 2.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2673 - - lja:Lj5g3v0627080.1 1225.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2673 5 53316959 53319891 Lja5g2673 5 53316959 53319891 ECH